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[175322_at]

Description AV177627_rc /REP_DB=TREMBL Accession /GB=AV177627 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk531c4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 28      4grp_highest_8_8 > 36      4grp_high_8_8 > 0      6grp_highest_nonorm > 50      6grp_total > 28      4grp_total > 07      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 218
1 2 3 4 range
A 650.5
(3)
P 		511.6
(-3)
P 		586.7
(0.2)
P 		548.2
(-1.4)
P 		139
B 580.5
(1)
P 		446.4
(-2.8)
P 		437.7
(-3)
P 		653.5
(3)
P 		216
C 614.5
(1)
P 		534.8
(-3)
P 		655.8
(3)
P 		583.6
(-0.6)
P 		121
avr 615.2
(3) 		497.6
(-3) 		560.1
(0.2) 		595.1
(2) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 620
1 2 3 4 5 6 range
A 843.2
(3)
P 		576.7
(-0.2)
P 		358
(-2.9)
P 		350.1
(-3)
P 		517.7
(-1)
P 		510.7
(-1)
P 		493
B 755.3
(3)
P 		602.2
(1.3)
P 		223.1
(-3)
P 		409.6
(-0.9)
P 		446.8
(-0.5)
P 		505
(0.2)
P 		532
C 824.7
(3)
P 		559.3
(-1)
P 		423.6
(-3)
P 		442.9
(-2.7)
P 		447.1
(-2.6)
P 		557
(-1)
P 		401
avr 807.7
(3) 		579.4
(0.1) 		334.9
(-3) 		400.9
(-2.2) 		470.5
(-1.3) 		524.2
(-0.6) 		473
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 236.8
(3)
P 		111.1
(-1.8)
P 		153.4
(-0.2)
P 		80.3
(-3)
P 		157
B 185.1
(3)
P 		110.3
(-2.4)
P 		101.4
(-3)
P 		139.3
(-0.3)
P 		84
C 203.4
(1.8)
P 		153.7
(-0.5)
P 		228.6
(3)
P 		98.4
(-3)
P 		130
avr 208.4
(3) 		125
(-1.9) 		161.1
(0.2) 		106
(-3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 252
1 2 3 4 5 6 range
A 155.4
(0.7)
P 		205.1
(3)
P 		78
(-3)
P 		88.8
(-2.5)
P 		156.2
(0.7)
P 		124.3
(-0.8)
P 		127
B 262.8
(3)
P 		200.4
(1.2)
P 		54.2
(-3)
P 		108.5
(-1.4)
P 		181.5
(0.7)
P 		188.3
(0.9)
P 		209
C 305.7
(3)
P 		170.7
(-0.7)
P 		107.8
(-2.5)
P 		89.1
(-3)
P 		144.7
(-1.5)
P 		186.5
(-0.3)
P 		217
avr 241.3
(3) 		192.1
(1.2) 		80
(-3) 		95.5
(-2.4) 		160.8
(0) 		166.4
(0.2) 		161
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175322_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21757
Sequence Type Exemplar sequence
Representative Public ID AV177627 NCBI
Target Description AV177627_rc /REP_DB=TREMBL Accession /GB=AV177627 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk531c4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F29G9.4 ENSEMBL cdna:known chromosome:CEL140:V:6006224:6018600:1 gene:F29G9.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6018310-6018590(+) 100.0 100.0
Public Domain and Genome References
Ensembl F29G9.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65905 Abnormal eversion of vulva protein 5, isoform a [Caenorhabditis elegans] ref|NP_504557.1| F29G9.4 [Caenorhabditis elegans] gb|AAX37360.1| bZIP transcription factor FOS-1b [Caenorhabditis elegans] 1.0E-148
blast ABA54419 Abnormal eversion of vulva protein 5, isoform b [Caenorhabditis elegans] gb|AAX37359.1| bZIP transcription factor FOS-1a [Caenorhabditis elegans] 1.0E-148
blast CAE64529 Hypothetical protein CBG09268 [Caenorhabditis briggsae] 2.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR004827 EMBL-EBI Basic-leucine zipper (bZIP) transcription factor 2.2E-11
Sequence
Target Sequence 
>C. ELEGANS:175322_AT
ccgtccagctctcattattacaaaatttcatacaatttcccgattttctatccaatttcc
atatctttaaattcagccagttctctcttttctcattatagtttcacttttagctactga
aattcccccaactttccgtttccaattattgtgataagaaatacattcaactgtaacatc
attttcttattcttcgaaaccatcaacttcttcactggtaaatcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGTCCAGCTCTCATTATTACAAAA 184 265 33 Antisense
CAAAATTTCATACAATTTCCCGATT 87 189 53 Antisense
TCCCGATTTTCTATCCAATTTCCAT 489 597 70 Antisense
TTCTATCCAATTTCCATATCTTTAA 284 691 78 Antisense
TTAAATTCAGCCAGTTCTCTCTTTT 30 685 99 Antisense
AGTTCTCTCTTTTCTCATTATAGTT 191 65 111 Antisense
TCACTTTTAGCTACTGAAATTCCCC 143 627 136 Antisense
CAACTTTCCGTTTCCAATTATTGTG 365 189 161 Antisense
GTAACATCATTTTCTTATTCTTCGA 619 461 205 Antisense
CTTATTCTTCGAAACCATCAACTTC 50 221 218 Antisense
TCAACTTCTTCACTGGTAAATCTTC 185 631 235 Antisense
Sequence Source Affymetrix Proprietary Database