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[175321_at]

Description AV176332_rc /REP_DB=TREMBL Accession /GB=AV176332 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk511g4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 37      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 57      6grp_total > 17      4grp_total > 61      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1341
1 2 3 4 range
A 2711.8
(3)
P 		1960.5
(-0.8)
P 		2122.7
(0)
P 		1516.2
(-3)
P 		1196
B 2506.5
(0.9)
P 		2487.9
(0.8)
P 		2857.6
(3)
P 		1865.8
(-3)
P 		992
C 2626.5
(2.5)
P 		2474.1
(1.6)
P 		2711.1
(3)
P 		1662.7
(-3)
P 		1048
avr 2614.9
(3) 		2307.5
(1) 		2563.8
(2.7) 		1681.6
(-3) 		933

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1502
1 2 3 4 5 6 range
A 3192.8
(3)
P 		2210.1
(-0.9)
P 		2690.8
(1)
P 		1690.4
(-3)
P 		2360.5
(-0.3)
P 		1757.5
(-2.7)
P 		1502
B 3133.5
(3)
P 		2247
(-1.1)
P 		2769.5
(1.3)
P 		2419.3
(-0.3)
P 		1831.1
(-3)
P 		2326.3
(-0.7)
P 		1302
C 2249.4
(0.8)
P 		2081.9
(-0.7)
P 		2082.6
(-0.7)
P 		2139.4
(-0.2)
P 		1830.7
(-3)
P 		2493.4
(3)
P 		663
avr 2858.6
(3) 		2179.7
(-1.8) 		2514.3
(0.6) 		2083
(-2.5) 		2007.4
(-3) 		2192.4
(-1.7) 		851
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 766
1 2 3 4 range
A 987.4
(3)
P 		425.6
(-1.4)
P 		554.9
(-0.4)
P 		221.9
(-3)
P 		766
B 799.3
(3)
P 		614.5
(0.2)
P 		662.2
(1)
P 		397.6
(-3)
P 		402
C 869.5
(2.3)
P 		711.3
(0.9)
P 		944.9
(3)
P 		280.4
(-3)
P 		665
avr 885.4
(3) 		583.8
(-0.1) 		720.7
(1.3) 		300
(-3) 		585

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 662
1 2 3 4 5 6 range
A 588.6
(-0.3)
P 		786
(3)
P 		586
(-0.4)
P 		428.7
(-3)
P 		712.3
(1.8)
P 		427.9
(-3)
P 		358
B 1090.3
(3)
P 		747.9
(-1.6)
P 		672.5
(-2.6)
P 		640.8
(-3)
P 		744
(-1.6)
P 		867.5
(0)
P 		450
C 833.7
(3)
P 		635.3
(0)
P 		530.1
(-1.5)
P 		430.2
(-3)
P 		592.4
(-0.6)
P 		834.7
(3)
P 		405
avr 837.5
(3) 		723.1
(1) 		596.2
(-1.3) 		499.9
(-3) 		682.9
(0.3) 		710
(0.7) 		338
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175321_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20337
Sequence Type Exemplar sequence
Representative Public ID AV176332 NCBI
Target Description AV176332_rc /REP_DB=TREMBL Accession /GB=AV176332 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk511g4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059303(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059303 NCBI Caenorhabditis elegans F33D11.11 (F33D11.11) mRNA, complete cds. 11/11 None
F33D11.11.1 ENSEMBL cdna:known chromosome:CEL140:I:5876415:5878090:-1 gene:F33D11.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5876472-5876756(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F33D11.11
Entrez Gene 172259 Entrez gene
SwissProt O44782 EMBL-EBI
WormBase CE09902 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.19002.1.S1_S_AT similar to Vesicle-associated membrane protein-associated protein B/C (VAMP-associated protein B/C) (VAMP-B/VAMP-C) (VAP-B/VAP-C) cfa
CANINE_2:CFAAFFX.18821.1.S1_AT similar to Vesicle-associated membrane protein-associated protein B/C (VAMP-associated protein B/C) (VAMP-B/VAMP-C) (VAP-B/VAP-C) cfa
DROSOPHILA_2:1631868_AT Saccharomyces cerevisiae UAS construct a of Pennetta dm
DROSGENOME1:154517_AT Saccharomyces cerevisiae UAS construct a of Pennetta dm
CHICKEN:GGAAFFX.12544.1.S1_S_AT VAMP (vesicle-associated membrane protein)-associated protein B and C gga
HG-FOCUS:202550_S_AT VAMP (vesicle-associated membrane protein)-associated protein B and C hs
HG-U133A_2:202550_S_AT VAMP (vesicle-associated membrane protein)-associated protein B and C hs
HG-U133A:202550_S_AT VAMP (vesicle-associated membrane protein)-associated protein B and C hs
HG-U133_PLUS_2:202550_S_AT VAMP (vesicle-associated membrane protein)-associated protein B and C hs
HG-U95AV2:40940_AT VAMP (vesicle-associated membrane protein)-associated protein B and C hs
HU35KSUBC:RC_W85943_AT VAMP (vesicle-associated membrane protein)-associated protein B and C hs
U133_X3P:G4759301_3P_A_AT VAMP (vesicle-associated membrane protein)-associated protein B and C hs
U133_X3P:HS.182625.0.S3_3P_AT VAMP (vesicle-associated membrane protein)-associated protein B and C hs
HG-U133A_2:202549_AT VAMP (vesicle-associated membrane protein)-associated protein B and C hs
HG-U133_PLUS_2:202549_AT VAMP (vesicle-associated membrane protein)-associated protein B and C hs
HG-U133A:202549_AT VAMP (vesicle-associated membrane protein)-associated protein B and C hs
HG-U95AV2:41757_AT VAMP (vesicle-associated membrane protein)-associated protein B and C hs
HU35KSUBB:RC_N21673_AT VAMP (vesicle-associated membrane protein)-associated protein B and C hs
U133_X3P:HS.159161.2.A1_3P_AT VAMP (vesicle-associated membrane protein)-associated protein B and C hs
HG-U133_PLUS_2:225923_AT VAMP (vesicle-associated membrane protein)-associated protein B and C hs
HG-U133B:225923_AT VAMP (vesicle-associated membrane protein)-associated protein B and C hs
HG-U95C:65637_AT VAMP (vesicle-associated membrane protein)-associated protein B and C hs
HG-U95AV2:40941_AT VAMP (vesicle-associated membrane protein)-associated protein B and C hs
HG-U95AV2:40942_G_AT VAMP (vesicle-associated membrane protein)-associated protein B and C hs
HG-U95E:68742_AT VAMP (vesicle-associated membrane protein)-associated protein B and C hs
MG-U74AV2:104501_AT vesicle-associated membrane protein, associated protein B and C mm
MOUSE430A_2:1436079_S_AT vesicle-associated membrane protein, associated protein B and C mm
MOE430A:1436079_S_AT vesicle-associated membrane protein, associated protein B and C mm
MOUSE430_2:1436079_S_AT vesicle-associated membrane protein, associated protein B and C mm
MU11KSUBA:AA268413_AT vesicle-associated membrane protein, associated protein B and C mm
MG-U74BV2:112389_AT vesicle-associated membrane protein, associated protein B and C mm
MG-U74BV2:105898_AT vesicle-associated membrane protein, associated protein B and C mm
MOE430A:1423152_AT vesicle-associated membrane protein, associated protein B and C mm
MOUSE430A_2:1423152_AT vesicle-associated membrane protein, associated protein B and C mm
MOUSE430_2:1423152_AT vesicle-associated membrane protein, associated protein B and C mm
MOE430B:1458501_AT vesicle-associated membrane protein, associated protein B and C mm
MOUSE430_2:1458501_AT vesicle-associated membrane protein, associated protein B and C mm
MG-U74CV2:167810_R_AT Vesicle-associated membrane protein, associated protein B and C (Vapb), mRNA mm
MU19KSUBB:TC34035_AT Vesicle-associated membrane protein, associated protein B and C (Vapb), mRNA mm
RAE230A:1390257_AT vesicle-associated membrane protein, associated protein B and C rn
RAT230_2:1390257_AT vesicle-associated membrane protein, associated protein B and C rn
RAE230A:1369597_AT vesicle-associated membrane protein, associated protein B and C rn
RAT230_2:1369597_AT vesicle-associated membrane protein, associated protein B and C rn
RAE230B:1395185_AT Vesicle-associated membrane protein, associated protein B and C rn
RAT230_2:1395185_AT Vesicle-associated membrane protein, associated protein B and C rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB96705 Hypothetical protein F33D11.11 [Caenorhabditis elegans] ref|NP_491704.1| F33D11.11 [Caenorhabditis elegans] 1.0E-127
blast CAE60411 Hypothetical protein CBG04017 [Caenorhabditis briggsae] 1.0E-107
blast AAB70357 Hypothetical protein F42G2.5 [Caenorhabditis elegans] ref|NP_494271.1| F42G2.5 [Caenorhabditis elegans] 1.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 3.2E-44
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491704.1 1 222-244
F33D11.11.1 1 222-244
Sequence
Target Sequence 
>C. ELEGANS:175321_AT
gaatacttgcctctttagtgaacgcagcgcgcaaaaatttcaaactttttctcaaactac
tttcacttctttcctttgtttattcgttttccgtttttcccggcgtcttctagaccatca
tagatccgtctagtgactgcctatcatcatacccggtagccattatcaagaattttattt
atttattttccattctatggttccccgttcccccaaccttttctcatttattttatgtgt
acaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATACTTGCCTCTTTAGTGAACGC 182 325 14 Antisense
CCTCTTTAGTGAACGCAGCGCGCAA 544 265 23 Antisense
CGCAGCGCGCAAAAATTTCAAACTT 76 251 36 Antisense
TTCACTTCTTTCCTTTGTTTATTCG 433 687 75 Antisense
CCGGCGTCTTCTAGACCATCATAGA 514 265 113 Antisense
GACCATCATAGATCCGTCTAGTGAC 452 383 126 Antisense
TAGATCCGTCTAGTGACTGCCTATC 541 653 134 Antisense
CTAGTGACTGCCTATCATCATACCC 477 225 143 Antisense
TCATACCCGGTAGCCATTATCAAGA 166 619 160 Antisense
TATTTTCCATTCTATGGTTCCCCGT 400 663 197 Antisense
TTTCTCATTTATTTTATGTGTACAA 640 671 233 Antisense
Sequence Source Affymetrix Proprietary Database