[Home] | [Total List]

[175320_at]

Description AV180623_rc /REP_DB=TREMBL Accession /GB=AV180623 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk609h7 : 3prime end, single read.
Cluster 6grp_total > 77      4grp_total > 28      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 45.9
(3)
A 		36.9
(1.6)
A 		6.6
(-3)
A 		7.6
(-2.8)
A 		39
B 5.3
(-3)
A 		6
(-2.9)
A 		22.8
(-0.1)
A 		41.1
(3)
A 		36
C 27.7
(0.8)
A 		42.3
(3)
A 		2.6
(-3)
A 		34
(1.7)
A 		40
avr 26.3
(2.3) 		28.4
(3) 		10.7
(-3) 		27.6
(2.7) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 26.2
(-0.2)
A 		4.1
(-3)
A 		21.1
(-0.8)
A 		14.2
(-1.7)
A 		49.1
(2.7)
A 		51.1
(3)
A 		47
B 18.6
(-0.8)
A 		3.7
(-3)
A 		4.3
(-2.9)
A 		44
(3)
A 		14.9
(-1.3)
A 		34.4
(1.6)
A 		40
C 4.4
(-3)
A 		30.4
(-0.2)
A 		33.5
(0.1)
A 		6.1
(-2.8)
A 		5.2
(-2.9)
A 		60.3
(3)
P 		56
avr 16.4
(-2.4) 		12.7
(-3) 		19.6
(-1.8) 		21.4
(-1.5) 		23.1
(-1.3) 		48.6
(3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 16.7
(3)
A 		8
(-0.3)
A 		1.7
(-2.8)
A 		1.1
(-3)
A 		16
B 1.7
(-2.8)
A 		1.5
(-3)
A 		5.3
(0.1)
A 		8.8
(3)
A 		7
C 9.2
(1.4)
A 		12.1
(3)
A 		0.9
(-3)
A 		5.7
(-0.4)
A 		11
avr 9.2
(3) 		7.2
(1.2) 		2.6
(-3) 		5.2
(-0.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 4.8
(-1.5)
A 		1.5
(-3)
A 		4.6
(-1.6)
A 		3.6
(-2.1)
A 		14.8
(3)
A 		12.4
(1.9)
A 		13
B 6.5
(-0.2)
A 		1.2
(-2.9)
A 		1
(-3)
A 		11.7
(2.4)
A 		6.1
(-0.4)
A 		12.8
(3)
A 		12
C 1.6
(-2.9)
A 		9.3
(-0.4)
A 		8.5
(-0.7)
A 		1.2
(-3)
A 		1.7
(-2.8)
A 		20.2
(3)
P 		19
avr 4.3
(-2.8) 		4
(-3) 		4.7
(-2.6) 		5.5
(-2.2) 		7.5
(-1.1) 		15.1
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175320_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20348
Sequence Type Exemplar sequence
Representative Public ID AV180623 NCBI
Target Description AV180623_rc /REP_DB=TREMBL Accession /GB=AV180623 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk609h7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV180623
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV180623 AV180623_rc /REP_DB=TREMBL Accession /GB=AV180623 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk609h7 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10834897-10835177(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175320_AT
aatttctaagtttctacgtctgatggtactagtgagtcttcatttaggactgaaagtttg
aatctagaaacttgtttcttggctgagtctttatacagctccgaatatctccttttttta
gtttttcaaaacaaacaagtatttccctagcttacaattaggccttttggcttacgtgcc
gatttccttaggcccaggcctcgaatttagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTCTAAGTTTCTACGTCTGATG 522 173 47 Antisense
GATGGTACTAGTGAGTCTTCATTTA 606 407 68 Antisense
GAAACTTGTTTCTTGGCTGAGTCTT 260 357 113 Antisense
GGCTGAGTCTTTATACAGCTCCGAA 185 539 127 Antisense
GCTCCGAATATCTCCTTTTTTTAGT 460 291 144 Antisense
CAAACAAGTATTTCCCTAGCTTACA 456 191 178 Antisense
CTAGCTTACAATTAGGCCTTTTGGC 113 223 193 Antisense
TTAGGCCTTTTGGCTTACGTGCCGA 61 41 204 Antisense
TTTGGCTTACGTGCCGATTTCCTTA 182 667 212 Antisense
ATTTCCTTAGGCCCAGGCCTCGAAT 467 15 228 Antisense
TTAGGCCCAGGCCTCGAATTTAGCC 165 605 234 Antisense
Sequence Source Affymetrix Proprietary Database