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[175319_at] GTP-binding ADP-ribosylation factor

Description AU116038_rc /REP_DB=TREMBL Accession /GB=AU116038 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk739h3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 93      4grp_highest_8_8 > 17      4grp_high_8_8 > 60      6grp_highest_nonorm > 86      6grp_total > 90      4grp_total > 59      6grp_highest_sub > 04_05_06      6grp_cgc > 96      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 553
1 2 3 4 range
A 1126.5
(3)
P 		801.4
(-3)
P 		924.5
(-0.7)
P 		810
(-2.8)
P 		325
B 718.8
(-2.2)
P 		894.5
(3)
P 		693.4
(-3)
P 		719.7
(-2.2)
P 		201
C 849.9
(-3)
P 		1063
(0.2)
P 		1246.8
(3)
P 		882.6
(-2.5)
P 		397
avr 898.4
(0.8) 		919.6
(1.6) 		954.9
(3) 		804.1
(-3) 		151

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 872
1 2 3 4 5 6 range
A 791.1
(-1.9)
P 		957.9
(0.8)
P 		1082.5
(2.9)
P 		1088.2
(3)
P 		1076.1
(2.8)
P 		726
(-3)
P 		362
B 1099.9
(0.4)
P 		1054.9
(-0.2)
P 		871.2
(-3)
P 		1182.3
(1.7)
P 		1115.1
(0.7)
P 		1270.6
(3)
P 		399
C 1156
(1)
P 		932.3
(-0.6)
P 		582.1
(-3)
P 		1453.8
(3)
P 		729.2
(-2)
P 		1443.2
(2.9)
P 		872
avr 1015.7
(-0.4) 		981.7
(-0.9) 		845.3
(-3) 		1241.4
(3) 		973.5
(-1.1) 		1146.6
(1.6) 		396
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 316
1 2 3 4 range
A 410.1
(3)
P 		174
(-1.9)
P 		241.7
(-0.5)
P 		118.6
(-3)
P 		292
B 229.2
(3)
P 		220.9
(2.3)
P 		160.7
(-2.4)
P 		153.4
(-3)
P 		76
C 281.3
(-0.2)
P 		305.6
(0.3)
P 		434.6
(3)
P 		148.8
(-3)
P 		286
avr 306.9
(3) 		233.5
(0.4) 		279
(2) 		140.3
(-3) 		167

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 337
1 2 3 4 5 6 range
A 145.8
(-3)
P 		340.7
(3)
P 		235.7
(-0.2)
P 		276
(1)
P 		324.7
(2.5)
P 		176.8
(-2)
P 		195
B 382.7
(0.9)
P 		351.1
(0.2)
P 		211.6
(-3)
P 		313.1
(-0.7)
P 		453.1
(2.5)
P 		473.8
(3)
P 		262
C 428.5
(2)
P 		284.5
(-0.6)
P 		148.2
(-3)
P 		292.4
(-0.4)
P 		235.9
(-1.4)
P 		483.1
(3)
P 		335
avr 319
(1) 		325.4
(1.2) 		198.5
(-3) 		293.8
(0.2) 		337.9
(1.7) 		377.9
(3) 		179
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175319_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20542
Sequence Type Exemplar sequence
Representative Public ID AU116038 NCBI
Target Description AU116038_rc /REP_DB=TREMBL Accession /GB=AU116038 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk739h3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063415(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063415 NCBI Caenorhabditis elegans ARF-Like family member (arl-1) (arl-1) mRNA, complete cds. 11/11 None
F54C9.10 ENSEMBL cdna:known chromosome:CEL140:II:8581922:8582965:1 gene:F54C9.10 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8582629-8582919(+) 74.14 100.0
Public Domain and Genome References
Gene Title GTP-binding ADP-ribosylation factor
Gene Symbol arl-1
Ensembl F54C9.10
Entrez Gene 174375 Entrez gene
SwissProt Q20758 EMBL-EBI
WormBase CE02250 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:20378_G_AT ADP-ribosylation factor 3 (ARF3) at
ATGENOME1:20377_AT ADP-ribosylation factor 3 (ARF3) at
ATH1-121501:263529_AT ADP-ribosylation factor 3 (ARF3) at
CANINE:1604949_S_AT similar to ADP-ribosylation factor-like 1 cfa
CANINE:1598570_S_AT similar to ADP-ribosylation factor-like 1 cfa
CANINE_2:CFA.10870.1.S1_AT similar to ADP-ribosylation factor-like 1 cfa
CANINE_2:CFAAFFX.11375.1.S1_S_AT similar to ADP-ribosylation factor-like 1 cfa
DROSOPHILA_2:1636130_AT Arflike at 72A dm
DROSGENOME1:143077_AT Arflike at 72A dm
CHICKEN:GGA.4764.1.S1_AT similar to ADP-ribosylation factor-like 1 gga
CHICKEN:GGA.4764.2.S1_A_AT similar to ADP-ribosylation factor-like 1 gga
HG-U133A:201659_S_AT ADP-ribosylation factor-like 1 hs
HG-U133_PLUS_2:201659_S_AT ADP-ribosylation factor-like 1 hs
HG-U133A_2:201659_S_AT ADP-ribosylation factor-like 1 hs
HG-FOCUS:201659_S_AT ADP-ribosylation factor-like 1 hs
HU35KSUBA:D31161_S_AT ADP-ribosylation factor-like 1 hs
HU35KSUBD:RC_AA406478_AT ADP-ribosylation factor-like 1 hs
HUGENEFL:L28997_AT ADP-ribosylation factor-like 1 hs
U133_X3P:G4755126_3P_A_AT ADP-ribosylation factor-like 1 hs
U133_X3P:HS.242894.0.S3_3P_AT ADP-ribosylation factor-like 1 hs
U133_X3P:HS.242894.0.S2_3P_AT ADP-ribosylation factor-like 1 hs
HG-U133A_2:201657_AT ADP-ribosylation factor-like 1 hs
HG-U133_PLUS_2:201657_AT ADP-ribosylation factor-like 1 hs
HG-U133A:201657_AT ADP-ribosylation factor-like 1 hs
HG-U133A_2:201658_AT ADP-ribosylation factor-like 1 hs
HG-U133_PLUS_2:201658_AT ADP-ribosylation factor-like 1 hs
HG-U133A:201658_AT ADP-ribosylation factor-like 1 hs
HG-U95AV2:37296_AT ADP-ribosylation factor-like 1 hs
HG-U95C:64901_AT ADP-ribosylation factor-like 1 hs
HG-U95E:91070_AT ADP-ribosylation factor-like 1 hs
MOE430A:1451025_AT ADP-ribosylation factor-like 1 mm
MOUSE430A_2:1451025_AT ADP-ribosylation factor-like 1 mm
MOUSE430_2:1451025_AT ADP-ribosylation factor-like 1 mm
MU11KSUBB:MSA.29779.0_S_AT ADP-ribosylation factor-like 1 mm
MU11KSUBB:MSA.7130.0_S_AT ADP-ribosylation factor-like 1 mm
MG-U74AV2:97505_AT ADP-ribosylation factor-like 1 mm
MOE430B:1447090_S_AT ADP-ribosylation factor-like 1 mm
MOUSE430_2:1447090_S_AT ADP-ribosylation factor-like 1 mm
MOE430B:1447089_AT ADP-ribosylation factor-like 1 mm
MOUSE430_2:1447089_AT ADP-ribosylation factor-like 1 mm
MU19KSUBC:TC36908_AT ADP-ribosylation factor-like 1 (Arl1), mRNA mm
MU19KSUBC:TC37649_AT ADP-ribosylation factor-like 1 (Arl1), mRNA mm
RG-U34A:RC_AA875253_AT ADP-ribosylation factor-like 1 rn
RG-U34A:U12402_AT ADP-ribosylation factor-like 1 rn
RAE230A:1371690_AT ADP-ribosylation factor-like 1 rn
RAT230_2:1371690_AT ADP-ribosylation factor-like 1 rn
RAE230A:1387358_AT ADP-ribosylation factor-like 1 rn
RAT230_2:1387358_AT ADP-ribosylation factor-like 1 rn
RG-U34A:RC_AI044423_AT ADP-ribosylation factor-like 1 rn
YEAST_2:1772976_AT Soluble GTPase with a role in regulation of membrane traffic; regulates potassium influx; G protein of the Ras superfamily, similar to ADP-ribosylation factor Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
7264 small GTPase mediated signal transduction inferred from electronic annotation QuickGO AmiGO
15031 protein transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90255 Hypothetical protein F54C9.10 [Caenorhabditis elegans] ref|NP_495816.1| ARF-Like family member (arl-1) [Caenorhabditis elegans] sp|Q20758|ARL1_CAEEL ADP-ribosylation factor-like protein 3.0E-98
blast CAE57578 Hypothetical protein CBG00557 [Caenorhabditis briggsae] 2.0E-97
blast EAL30523 GA19306-PA [Drosophila pseudoobscura] 3.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR006689 EMBL-EBI ARF/SAR superfamily 7.0E-117
Sequence
Target Sequence 
>C. ELEGANS:175319_AT
tgtagatgatttctgggcactcgtaatacattttaattctccatattttgtttagctgca
aacacgaggtgtgtctttctctctataattctgtgatttttcttccttttcttctatcct
gttctgttctttctttccttccttttttgtcttcaaaaatctcgttttatttaatttcta
tccgcttaatgattggttgttctattgccttatcccaatgttcttgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTAGATGATTTCTGGGCACTCGTA 112 561 39 Antisense
TTTCTGGGCACTCGTAATACATTTT 518 669 48 Antisense
ATACATTTTAATTCTCCATATTTTG 167 25 64 Antisense
CTCCATATTTTGTTTAGCTGCAAAC 636 235 77 Antisense
ACACGAGGTGTGTCTTTCTCTCTAT 664 109 100 Antisense
GTCTTTCTCTCTATAATTCTGTGAT 486 469 111 Antisense
TTTGTCTTCAAAAATCTCGTTTTAT 547 665 184 Antisense
TTTATTTAATTTCTATCCGCTTAAT 683 613 204 Antisense
ATCCGCTTAATGATTGGTTGTTCTA 191 39 218 Antisense
ATTGGTTGTTCTATTGCCTTATCCC 557 3 230 Antisense
TTGCCTTATCCCAATGTTCTTGAGA 353 701 243 Antisense
Sequence Source Affymetrix Proprietary Database