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[175318_at]

Description AV184121_rc /REP_DB=TREMBL Accession /GB=AV184121 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk660d7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 29      4grp_highest_8_8 > 29      4grp_high_8_8 > 07      6grp_highest_nonorm > 82      6grp_total > 28      4grp_total > 06      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 262
1 2 3 4 range
A 294.2
(0.3)
P 		187.2
(-3)
P 		299.3
(0.5)
P 		380.2
(3)
P 		193
B 388.8
(0.9)
P 		273.6
(-3)
P 		328.6
(-1.1)
P 		449.6
(3)
P 		176
C 340.3
(-2.2)
P 		325.8
(-3)
P 		369.6
(-0.5)
P 		429
(3)
P 		103
avr 341.1
(0) 		262.2
(-3) 		332.5
(-0.3) 		419.6
(3) 		157

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 263
1 2 3 4 5 6 range
A 357.3
(-0.7)
P 		328.4
(-2.1)
P 		435.2
(3)
P 		326.9
(-2.1)
P 		359.9
(-0.6)
P 		308.6
(-3)
P 		127
B 500.5
(3)
P 		406.6
(-0.2)
P 		337.2
(-2.5)
P 		322.9
(-3)
P 		432.4
(0.7)
P 		415.1
(0.1)
P 		178
C 423.1
(2.5)
P 		418.5
(2.4)
P 		247.5
(-2.7)
P 		237.4
(-3)
P 		341.6
(0.1)
P 		438.9
(3)
P 		202
avr 427
(3) 		384.5
(1.1) 		340
(-1) 		295.7
(-3) 		378
(0.8) 		387.5
(1.2) 		131
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 107.1
(3)
P 		40.6
(-3)
P 		78.3
(0.4)
P 		55.6
(-1.6)
P 		67
B 124
(3)
P 		67.6
(-3)
P 		76.1
(-2.1)
P 		95.8
(0)
P 		56
C 112.7
(1.3)
P 		93.7
(-0.7)
P 		128.8
(3)
P 		72.3
(-3)
P 		57
avr 114.6
(3) 		67.3
(-3) 		94.4
(0.4) 		74.6
(-2.1) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 65.9
(-3)
P 		116.8
(3)
P 		94.8
(0.4)
P 		82.9
(-1)
P 		108.6
(2)
P 		75.1
(-1.9)
P 		51
B 174.2
(2.9)
P 		135.3
(0.4)
P 		81.9
(-3)
P 		85.5
(-2.8)
P 		175.7
(3)
P 		154.8
(1.7)
P 		94
C 156.8
(3)
P 		127.7
(1.4)
P 		63
(-2.2)
P 		47.7
(-3)
P 		110.5
(0.5)
P 		146.9
(2.5)
P 		109
avr 132.3
(3) 		126.6
(2.4) 		79.9
(-2.2) 		72
(-3) 		131.6
(2.9) 		125.6
(2.3) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175318_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20212
Sequence Type Exemplar sequence
Representative Public ID AV184121 NCBI
Target Description AV184121_rc /REP_DB=TREMBL Accession /GB=AV184121 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk660d7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059301(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059301 NCBI Caenorhabditis elegans F33D11.12 (F33D11.12) mRNA, complete cds. 11/11 None
F33D11.12 ENSEMBL cdna:known chromosome:CEL140:I:5870800:5874567:-1 gene:F33D11.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5870851-5871132(-) 89.68 100.0
Public Domain and Genome References
Gene Title
Ensembl F33D11.12
Entrez Gene 172257 Entrez gene
SwissProt Q95X59 EMBL-EBI
WormBase CE28292 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1588977_AT similar to Zinc finger DHHC domain containing protein 3 (Zinc finger protein 373) (DHHC1 protein) cfa
CANINE_2:CFA.19778.1.S1_AT similar to Zinc finger DHHC domain containing protein 3 (Zinc finger protein 373) (DHHC1 protein) cfa
CANINE_2:CFAAFFX.21722.1.S1_AT similar to Zinc finger DHHC domain containing protein 3 (Zinc finger protein 373) (DHHC1 protein) cfa
CANINE_2:CFAAFFX.21726.1.S1_AT similar to Zinc finger DHHC domain containing protein 3 (Zinc finger protein 373) (DHHC1 protein) cfa
CANINE_2:CFAAFFX.21726.1.S1_S_AT similar to Zinc finger DHHC domain containing protein 3 (Zinc finger protein 373) (DHHC1 protein) cfa
DROSOPHILA_2:1630861_AT dm
DROSGENOME1:152517_AT dm
CHICKEN:GGAAFFX.7558.1.S1_AT similar to ZDHHC3 protein gga
CHICKEN:GGAAFFX.7558.2.S1_S_AT similar to ZDHHC3 protein gga
HG-U133A:218078_S_AT zinc finger, DHHC-type containing 3 hs
HG-U133_PLUS_2:218078_S_AT zinc finger, DHHC-type containing 3 hs
HG-FOCUS:218078_S_AT zinc finger, DHHC-type containing 3 hs
HG-U133A_2:218078_S_AT zinc finger, DHHC-type containing 3 hs
HU35KSUBA:AA070671_AT zinc finger, DHHC-type containing 3 hs
HU35KSUBB:RC_W46450_AT zinc finger, DHHC-type containing 3 hs
HU35KSUBD:RC_W70077_AT zinc finger, DHHC-type containing 3 hs
HU35KSUBD:RC_AA609765_S_AT zinc finger, DHHC-type containing 3 hs
U133_X3P:G7706132_3P_A_AT zinc finger, DHHC-type containing 3 hs
U133_X3P:HS.14896.0.A1_3P_A_AT zinc finger, DHHC-type containing 3 hs
HG-U133A:218077_S_AT zinc finger, DHHC-type containing 3 hs
HG-U133A_2:218077_S_AT zinc finger, DHHC-type containing 3 hs
HG-U133_PLUS_2:218077_S_AT zinc finger, DHHC-type containing 3 hs
HG-U95AV2:39751_AT zinc finger, DHHC-type containing 3 hs
HG-U95C:65592_AT zinc finger, DHHC-type containing 3 hs
MOE430A:1423646_AT zinc finger, DHHC domain containing 3 mm
MOUSE430_2:1423646_AT zinc finger, DHHC domain containing 3 mm
MOUSE430A_2:1423646_AT zinc finger, DHHC domain containing 3 mm
MOE430A:1423647_A_AT zinc finger, DHHC domain containing 3 mm
MOUSE430A_2:1423647_A_AT zinc finger, DHHC domain containing 3 mm
MOUSE430_2:1423647_A_AT zinc finger, DHHC domain containing 3 mm
MG-U74AV2:97857_AT zinc finger, DHHC domain containing 3 mm
MG-U74BV2:115863_AT zinc finger, DHHC domain containing 3 mm
MG-U74BV2:115864_AT zinc finger, DHHC domain containing 3 mm
MG-U74BV2:110845_AT zinc finger, DHHC domain containing 3 mm
MG-U74BV2:164858_F_AT zinc finger, DHHC domain containing 3 mm
MG-U74CV2:171421_R_AT zinc finger, DHHC domain containing 3 mm
MOE430B:1455368_AT zinc finger, DHHC domain containing 3 mm
MOUSE430_2:1455368_AT zinc finger, DHHC domain containing 3 mm
MU19KSUBA:TC14462_AT GODZ mRNA for Golgi-specific DHHC zinc figer protein mm
MU19KSUBA:TC16219_AT GODZ mRNA for Golgi-specific DHHC zinc figer protein mm
MU19KSUBA:TC22960_AT GODZ mRNA for Golgi-specific DHHC zinc figer protein mm
MU19KSUBC:TC40051_AT GODZ mRNA for Golgi-specific DHHC zinc figer protein mm
RG-U34A:RC_AA800535_AT zinc finger, DHHC domain containing 3 (predicted) rn
RAE230A:1390039_AT zinc finger, DHHC domain containing 3 (predicted) rn
RAT230_2:1390039_AT zinc finger, DHHC domain containing 3 (predicted) rn
RAE230B:1393388_AT Zinc finger, DHHC domain containing 3 (predicted) rn
RAT230_2:1393388_AT Zinc finger, DHHC domain containing 3 (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
46872 metal ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68359 Hypothetical protein F33D11.12 [Caenorhabditis elegans] ref|NP_491702.1| F33D11.12 [Caenorhabditis elegans] 1.0E-140
blast T32771 hypothetical protein F33D11.9b - Caenorhabditis elegans 1.0E-140
blast CAE60413 Hypothetical protein CBG04019 [Caenorhabditis briggsae] 1.0E-123
Protein Domains
Database ID Description E-Value
Pfam IPR001594 EMBL-EBI Zn-finger, DHHC type 7.1E-32
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491702.1 4 7-25,29-51,128-150,165-187
F33D11.12 4 7-25,29-51,128-150,165-187
Sequence
Target Sequence 
>C. ELEGANS:175318_AT
gaagtgacagaatttcgacgttgtaaaattgagcttcttcacagcagatgattcatcttt
atactccaagtagatataatattttttatcgtaaaaaaactatatatgacgggttatctc
aaattcttgtgtggttttcttctaattattaatttattttcatatatttttctcagtttc
tacttaatcaaacattgctctgtttttctttgtcataagta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTGACAGAATTTCGACGTTGTA 291 335 36 Antisense
CGACGTTGTAAAATTGAGCTTCTTC 642 249 51 Antisense
GAGCTTCTTCACAGCAGATGATTCA 344 389 66 Antisense
GATGATTCATCTTTATACTCCAAGT 178 411 82 Antisense
AAAACTATATATGACGGGTTATCTC 220 127 131 Antisense
GACGGGTTATCTCAAATTCTTGTGT 243 377 143 Antisense
CAAATTCTTGTGTGGTTTTCTTCTA 523 189 155 Antisense
TCTTGTGTGGTTTTCTTCTAATTAT 676 617 160 Antisense
CATATATTTTTCTCAGTTTCTACTT 26 215 196 Antisense
TTCTACTTAATCAAACATTGCTCTG 393 689 213 Antisense
GCTCTGTTTTTCTTTGTCATAAGTA 686 299 232 Antisense
Sequence Source Affymetrix Proprietary Database