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[175317_s_at]

Description AV199494_rc /REP_DB=TREMBL Accession /GB=AV199494 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk547b7 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 76      6grp_total > 56      4grp_total > 23      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 428
1 2 3 4 range
A 527.1
(3)
P 		120.2
(-3)
A 		179.7
(-2.1)
A 		509.4
(2.7)
P 		407
B 524.8
(3)
P 		160.8
(-3)
M 		162
(-3)
P 		439.1
(1.6)
P 		364
C 548.4
(3)
P 		165.4
(-3)
A 		206.1
(-2.4)
P 		478.1
(1.9)
P 		383
avr 533.4
(3) 		148.8
(-3) 		182.6
(-2.5) 		475.5
(2.1) 		385

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 272.2
(-0)
M 		291.1
(3)
P 		253.6
(-3)
P 		287
(2.3)
P 		257.7
(-2.3)
P 		283.7
(1.8)
P 		38
B 265.5
(-2.1)
P 		321.4
(2)
P 		306.3
(0.9)
P 		253.8
(-3)
P 		289.5
(-0.4)
P 		334.7
(3)
P 		81
C 268.5
(-2.5)
P 		327
(-0.1)
P 		284.6
(-1.8)
P 		290.5
(-1.6)
P 		255.8
(-3)
P 		402.9
(3)
P 		147
avr 268.7
(-2.9) 		313.2
(0.8) 		281.5
(-1.9) 		277.1
(-2.2) 		267.7
(-3) 		340.4
(3) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 191.9
(3)
P 		26.1
(-3)
A 		47
(-2.2)
A 		74.6
(-1.2)
P 		166
B 167.4
(3)
P 		39.7
(-2.9)
M 		37.5
(-3)
P 		93.6
(-0.4)
P 		130
C 181.5
(3)
P 		47.5
(-3)
A 		71.8
(-1.9)
P 		80.6
(-1.5)
P 		134
avr 180.3
(3) 		37.8
(-3) 		52.1
(-2.4) 		82.9
(-1.1) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 50.2
(-3)
M 		103.5
(3)
P 		55.2
(-2.4)
P 		72.8
(-0.5)
P 		77.8
(0.1)
P 		69.1
(-0.9)
P 		53
B 92.4
(-0.4)
P 		107
(1.1)
P 		74.4
(-2.3)
P 		67.2
(-3)
P 		117.6
(2.3)
P 		124.8
(3)
P 		58
C 99.5
(0.2)
P 		99.8
(0.2)
P 		72.4
(-1.9)
P 		58.4
(-3)
P 		82.8
(-1.1)
P 		134.9
(3)
P 		77
avr 80.7
(-1) 		103.4
(2.1) 		67.3
(-2.8) 		66.1
(-3) 		92.7
(0.7) 		109.6
(3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175317_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20338
Sequence Type Exemplar sequence
Representative Public ID AV199494 NCBI
Target Description AV199494_rc /REP_DB=TREMBL Accession /GB=AV199494 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk547b7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170890(11), NM_170892(11), NM_170893(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170890 NCBI Caenorhabditis elegans E02D9.1c (E02D9.1) mRNA, complete cds. 11/11 None
NM_170892 NCBI Caenorhabditis elegans E02D9.1a (E02D9.1) mRNA, complete cds. 11/11 None
NM_170893 NCBI Caenorhabditis elegans E02D9.1d (E02D9.1) mRNA, complete cds. 11/11 None
GENEFINDER00000044089 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6808558:6812927:1 11/11 None
SNAP00000044087 ENSEMBL cdna:SNAP chromosome:CEL140:I:6810464:6812927:1 11/11 None
E02D9.1c ENSEMBL cdna:known chromosome:CEL140:I:6808558:6812927:1 gene:E02D9.1 11/11 A 
E02D9.1a ENSEMBL cdna:known chromosome:CEL140:I:6810332:6812927:1 gene:E02D9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172405 4 3 NM_170890 175317_s_at (11), 179946_s_at (11)
NM_170891 179946_s_at (11)
NM_170892 175317_s_at (11)
NM_170893 175317_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6812094-6812869(+) 100.0 100.0
Public Domain and Genome References
Ensembl E02D9.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_740881 E02D9.1a [Caenorhabditis elegans] gb|AAC78159.2| Hypothetical protein E02D9.1a [Caenorhabditis elegans] 0.0
blast CAE67310 Hypothetical protein CBG12765 [Caenorhabditis briggsae] 1.0E-154
blast CAE67310 Hypothetical protein CBG12765 [Caenorhabditis briggsae] 1.0E-148
blast CAE67310 Hypothetical protein CBG12765 [Caenorhabditis briggsae] 1.0E-131
blast NP_740881 E02D9.1a [Caenorhabditis elegans] gb|AAC78159.2| Hypothetical protein E02D9.1a [Caenorhabditis elegans] 1.0E-123
blast NP_740882 E02D9.1d [Caenorhabditis elegans] gb|AAY44016.1| Hypothetical protein E02D9.1d [Caenorhabditis elegans] 1.0E-108
Protein Families
Method ID Description E-Value
hanks 1.9.3 AGC group; AGC Other; Mast205 1.0E-16
hanks 1.9.3 AGC group; AGC Other; Mast205 2.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.7E-43
Pfam IPR000719 EMBL-EBI Protein kinase 4.1E-35
Pfam IPR000719 EMBL-EBI Protein kinase 6.3E-37
Pfam IPR000719 EMBL-EBI Protein kinase 0.26
Pfam IPR000719 EMBL-EBI Protein kinase 1.1E-36
Pfam IPR000719 EMBL-EBI Protein kinase 1.1E-36
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_740881.1 1 25-47
E02D9.1a 1 25-47
GENEFINDER00000044089 1 735-757
Sequence
Target Sequence 
>C. ELEGANS:175317_S_AT
cgatatttggtgtttcgggctcacactttgggaatttgctatcggtccgaatctggaaga
atatctcaatggattgtcatcttatgaagagattactgtagaaccgattgatggttttcc
agagtcattggctgttcttatatctaattgtcttcgtcgtcaaccatcggctcgttggaa
tgctgatcaaattgaacaaagtgattatctacgagatcttcctgaaccgaatcgtcaaag
tgttgcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGATATTTGGTGTTTCGGGCTCACA 682 247 31 Antisense
CGGGCTCACACTTTGGGAATTTGCT 156 243 46 Antisense
GAATTTGCTATCGGTCCGAATCTGG 417 325 62 Antisense
GAATATCTCAATGGATTGTCATCTT 62 327 89 Antisense
GTAGAACCGATTGATGGTTTTCCAG 526 457 128 Antisense
GAGTCATTGGCTGTTCTTATATCTA 650 397 152 Antisense
TCGTCAACCATCGGCTCGTTGGAAT 240 605 187 Antisense
ATCGGCTCGTTGGAATGCTGATCAA 239 35 196 Antisense
TATCTACGAGATCTTCCTGAACCGA 99 659 236 Antisense
GAGATCTTCCTGAACCGAATCGTCA 278 397 243 Antisense
GAACCGAATCGTCAAAGTGTTGCTA 396 345 254 Antisense
Sequence Source Affymetrix Proprietary Database