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[175316_s_at]

Description AU116387_rc /REP_DB=TREMBL Accession /GB=AU116387 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk744b2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 05      4grp_highest_8_8 > 52      4grp_high_8_8 > 24      6grp_highest_nonorm > 50      6grp_total > 05      4grp_total > 39      6grp_highest_sub > De      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 791.5
(3)
P 		619.5
(-1.7)
P 		570.4
(-3)
P 		691
(0.3)
P 		221
B 714.2
(3)
P 		639.3
(-1.5)
P 		645.8
(-1.1)
P 		613.6
(-3)
P 		101
C 774.8
(3)
P 		577.8
(-3)
P 		635.2
(-1.3)
P 		650.8
(-0.8)
P 		197
avr 760.2
(3) 		612.2
(-3) 		617.1
(-2.8) 		651.8
(-1.4) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 457
1 2 3 4 5 6 range
A 638.8
(3)
P 		552.5
(1.3)
P 		481.1
(-0.1)
P 		447.5
(-0.7)
P 		471.3
(-0.3)
P 		331.4
(-3)
P 		307
B 788.3
(3)
P 		587
(-0.5)
P 		497
(-2.1)
P 		493.1
(-2.2)
P 		593.5
(-0.4)
P 		446.6
(-3)
P 		342
C 564.5
(3)
P 		552.2
(2.7)
P 		476.6
(0.5)
P 		353.2
(-3)
P 		454.7
(-0.1)
P 		401
(-1.6)
P 		211
avr 663.9
(3) 		563.9
(0.8) 		484.9
(-1) 		431.3
(-2.2) 		506.5
(-0.5) 		393
(-3) 		271
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 187
1 2 3 4 range
A 288.2
(3)
P 		134.5
(-1.9)
P 		149.1
(-1.5)
P 		101.2
(-3)
P 		187
B 227.8
(3)
P 		157.9
(-1.3)
P 		149.6
(-1.8)
P 		130.8
(-3)
P 		97
C 256.5
(3)
P 		166.1
(-0.7)
P 		221.4
(1.6)
P 		109.7
(-3)
P 		147
avr 257.5
(3) 		152.8
(-1.4) 		173.4
(-0.5) 		113.9
(-3) 		144

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 203
1 2 3 4 5 6 range
A 117.8
(-1.1)
P 		196.5
(3)
P 		104.8
(-1.8)
P 		113.5
(-1.3)
P 		142.2
(0.2)
P 		80.7
(-3)
P 		116
B 274.3
(3)
P 		195.4
(-0.1)
P 		120.7
(-3)
P 		130.6
(-2.6)
P 		241.1
(1.7)
P 		166.5
(-1.2)
P 		154
C 209.2
(3)
P 		168.5
(1.2)
P 		121.3
(-0.8)
P 		71
(-3)
P 		147.1
(0.3)
P 		134.2
(-0.3)
P 		138
avr 200.4
(3) 		186.8
(2.1) 		115.6
(-2.3) 		105
(-3) 		176.8
(1.5) 		127.1
(-1.6) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175316_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22018
Sequence Type Exemplar sequence
Representative Public ID AU116387 NCBI
Target Description AU116387_rc /REP_DB=TREMBL Accession /GB=AU116387 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk744b2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071023(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071023 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-304) (tag-304) mRNA, complete cds. 11/11 A 
SNAP00000036260 ENSEMBL cdna:SNAP chromosome:CEL140:V:1467596:1470791:1 11/11 None
GENEFINDER00000036265 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1467596:1470791:1 11/11 None
F53E2.1 ENSEMBL cdna:known chromosome:CEL140:V:1467573:1470931:1 gene:F53E2.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1469438-1470858(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-304
Ensembl F53E2.1
Entrez Gene 178639 Entrez gene
SwissProt Q9UAU3 EMBL-EBI
WormBase CE30280 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD14702 Temporarily assigned gene name protein 304 [Caenorhabditis elegans] ref|NP_503424.2| Temporarily Assigned Gene name family member (tag-304) [Caenorhabditis elegans] 0.0
blast CAE62474 Hypothetical protein CBG06570 [Caenorhabditis briggsae] 9.0E-71
blast AAO24554 At1g61150 [Arabidopsis thaliana] 1.0E-13
Sequence
Target Sequence 
>C. ELEGANS:175316_S_AT
ccaagaccatcgcttttacgggatgttcgcagatgcgctcctcatcgccaagtagaaaac
atgcaaccattgctgaattttcggaggaacattattccaagccgtatggattccgccgaa
acaagttctgcctttcgcggtgaagtcgacctaacccaggacatgcgttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAAGACCATCGCTTTTACGGGATG 559 271 47 Antisense
ATCGCTTTTACGGGATGTTCGCAGA 290 29 55 Antisense
ACGGGATGTTCGCAGATGCGCTCCT 695 95 64 Antisense
CGCTCCTCATCGCCAAGTAGAAAAC 531 255 82 Antisense
GCCAAGTAGAAAACATGCAACCATT 651 277 93 Antisense
TGCAACCATTGCTGAATTTTCGGAG 289 575 108 Antisense
GGAGGAACATTATTCCAAGCCGTAT 3 517 129 Antisense
CCGCCGAAACAAGTTCTGCCTTTCG 493 261 159 Antisense
TTCTGCCTTTCGCGGTGAAGTCGAC 316 659 172 Antisense
TTCGCGGTGAAGTCGACCTAACCCA 501 697 180 Antisense
TCGACCTAACCCAGGACATGCGTTG 227 599 192 Antisense
Sequence Source Affymetrix Proprietary Database