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[175313_at]

Description AV177619_rc /REP_DB=TREMBL Accession /GB=AV177619 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk531b8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 29      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 40      6grp_total > 28      4grp_total > 30      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 562
1 2 3 4 range
A 899.7
(3)
P 		544.5
(-1.9)
P 		468.1
(-3)
P 		628
(-0.8)
P 		432
B 722.4
(1.5)
P 		523.6
(-0.8)
P 		338.1
(-3)
P 		848.3
(3)
P 		510
C 855.3
(3)
P 		476.6
(-3)
P 		495.8
(-2.7)
P 		695.3
(0.5)
P 		379
avr 825.8
(3) 		514.9
(-1.8) 		434
(-3) 		723.9
(1.4) 		392

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 671
1 2 3 4 5 6 range
A 831.7
(3)
P 		738
(1.5)
P 		465.3
(-3)
P 		699.6
(0.8)
P 		614.5
(-0.6)
P 		599.5
(-0.8)
P 		366
B 799.7
(2.8)
P 		815.3
(3)
P 		383.3
(-3)
P 		524.6
(-1)
P 		676.2
(1.1)
P 		726.9
(1.8)
P 		432
C 1054.1
(3)
P 		703.7
(-1.2)
P 		627.5
(-2.2)
P 		557.1
(-3)
P 		583.2
(-2.7)
P 		713.2
(-1.1)
P 		497
avr 895.2
(3) 		752.3
(0.9) 		492
(-3) 		593.8
(-1.5) 		624.6
(-1) 		679.9
(-0.2) 		403
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 249
1 2 3 4 range
A 327.6
(3)
P 		118.2
(-2.3)
P 		122.4
(-2.2)
P 		91.9
(-3)
P 		236
B 230.4
(3)
P 		129.3
(-1)
P 		78.3
(-3)
P 		180.8
(1)
P 		152
C 283.1
(3)
P 		137
(-2.3)
P 		172.8
(-1)
P 		117.2
(-3)
P 		166
avr 280.4
(3) 		128.2
(-2.9) 		124.5
(-3) 		130
(-2.8) 		156

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 298
1 2 3 4 5 6 range
A 153.3
(-1.1)
P 		262.5
(3)
P 		101.3
(-3)
P 		177.4
(-0.2)
P 		185.4
(0.1)
P 		145.9
(-1.3)
P 		161
B 278.2
(3)
P 		271.4
(2.8)
P 		93.1
(-3)
P 		139
(-1.5)
P 		274.7
(2.9)
P 		271.1
(2.8)
P 		185
C 390.7
(3)
P 		214.7
(-0.8)
P 		159.7
(-2)
P 		112
(-3)
P 		188.7
(-1.3)
P 		238.8
(-0.3)
P 		279
avr 274.1
(3) 		249.5
(2.1) 		118
(-3) 		142.8
(-2) 		216.3
(0.8) 		218.6
(0.9) 		156
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175313_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20329
Sequence Type Exemplar sequence
Representative Public ID AV177619 NCBI
Target Description AV177619_rc /REP_DB=TREMBL Accession /GB=AV177619 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk531b8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060106(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060106 NCBI Caenorhabditis elegans C17E4.10 (C17E4.10) mRNA, complete cds. 11/11 A 
C17E4.10 ENSEMBL cdna:known chromosome:CEL140:I:9443526:9449139:1 gene:C17E4.10 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000000966 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9448720-9449003(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17E4.10
Entrez Gene 172770 Entrez gene
SwissProt Q93231 EMBL-EBI
WormBase CE32589 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02748 Hypothetical protein C17E4.10 [Caenorhabditis elegans] ref|NP_492507.2| C17E4.10 [Caenorhabditis elegans] 1.0E-160
blast CAE60189 Hypothetical protein CBG03746 [Caenorhabditis briggsae] 1.0E-85
Sequence
Target Sequence 
>C. ELEGANS:175313_AT
gaatttttgcagaagacgctacaggaaatagagacatcaacatctcagtcagatgctcca
aatacatcaagatctactacaacatccacatcataataattattcattcatataggtgct
tttgtcatcccatgattcctatgattgttgtaatctctcaatcaagtctttgttttatca
cattttgccattattgcatattttctttgaaatctgtaacatatttcccgagctttcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTTTTGCAGAAGACGCTACAGG 88 323 17 Antisense
TAGAGACATCAACATCTCAGTCAGA 386 653 45 Antisense
ATCTCAGTCAGATGCTCCAAATACA 237 33 58 Antisense
GCTCCAAATACATCAAGATCTACTA 6 299 71 Antisense
TATAGGTGCTTTTGTCATCCCATGA 293 657 127 Antisense
GTCATCCCATGATTCCTATGATTGT 540 467 140 Antisense
TCCTATGATTGTTGTAATCTCTCAA 220 593 153 Antisense
AATCTCTCAATCAAGTCTTTGTTTT 71 171 168 Antisense
GTCTTTGTTTTATCACATTTTGCCA 563 469 182 Antisense
ATTTTGCCATTATTGCATATTTTCT 259 15 198 Antisense
TGTAACATATTTCCCGAGCTTTCCA 427 559 231 Antisense
Sequence Source Affymetrix Proprietary Database