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[175310_s_at]

Description AU113701_rc /REP_DB=TREMBL Accession /GB=AU113701 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk710f6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 28      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 67      6grp_total > 28      4grp_total > 45      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2546
1 2 3 4 range
A 3257.6
(3)
P 		1475.2
(-1.7)
P 		1730.8
(-1)
P 		993.2
(-3)
P 		2264
B 2320.9
(3)
P 		2301.1
(2.9)
P 		1310.9
(-2.9)
P 		1287.4
(-3)
P 		1034
C 3539.5
(3)
P 		2835.8
(1.3)
P 		1733.8
(-1.3)
P 		1020.3
(-3)
P 		2519
avr 3039.3
(3) 		2204
(0.4) 		1591.8
(-1.5) 		1100.3
(-3) 		1939

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1248
1 2 3 4 5 6 range
A 1653.7
(0.4)
P 		1834.3
(2.2)
P 		1523.1
(-0.9)
P 		1310.8
(-3)
P 		1915.1
(3)
P 		1725.8
(1.1)
P 		604
B 2559
(3)
P 		1755.4
(-2.6)
P 		2115.9
(-0.1)
P 		1753.3
(-2.6)
P 		1739.8
(-2.7)
P 		1700.7
(-3)
P 		858
C 2526.2
(3)
P 		1465.4
(-2.8)
P 		1818.6
(-0.8)
P 		1419.5
(-3)
P 		1995.2
(0.1)
P 		1773.3
(-1.1)
P 		1107
avr 2246.3
(3) 		1685
(-1.5) 		1819.2
(-0.4) 		1494.5
(-3) 		1883.4
(0.1) 		1733.3
(-1.1) 		752
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1041
1 2 3 4 range
A 1186.1
(3)
P 		320.2
(-2)
P 		452.5
(-1.2)
P 		145.4
(-3)
P 		1041
B 740.1
(3)
P 		568.3
(0.8)
P 		303.8
(-2.6)
P 		274.3
(-3)
P 		466
C 1171.7
(3)
P 		815.3
(0.9)
P 		604.3
(-0.4)
P 		172
(-3)
P 		1000
avr 1032.6
(3) 		567.9
(-0.3) 		453.5
(-1.2) 		197.2
(-3) 		835

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 651
1 2 3 4 5 6 range
A 304.8
(-3)
P 		652.4
(3)
P 		331.7
(-2.5)
P 		332.4
(-2.5)
P 		577.9
(1.7)
P 		420.2
(-1)
P 		348
B 890.4
(3)
P 		584.3
(-1.3)
P 		513.8
(-2.3)
P 		464.4
(-3)
P 		706.8
(0.4)
P 		634.2
(-0.6)
P 		426
C 936.4
(3)
P 		447.1
(-1.5)
P 		462.9
(-1.4)
P 		285.5
(-3)
P 		645.6
(0.3)
P 		593.6
(-0.2)
P 		651
avr 710.5
(3) 		561.3
(0.4) 		436.1
(-1.7) 		360.8
(-3) 		643.4
(1.8) 		549.3
(0.2) 		350
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175310_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22292
Sequence Type Exemplar sequence
Representative Public ID AU113701 NCBI
Target Description AU113701_rc /REP_DB=TREMBL Accession /GB=AU113701 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk710f6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078233(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078233 NCBI Caenorhabditis elegans ZK1073.1 (ZK1073.1) mRNA, complete cds. 11/11 None
ZK1073.1.1 ENSEMBL cdna:known chromosome:CEL140:X:16123862:16128730:-1 gene:ZK1073.1 11/11 None
ZK1073.1.2 ENSEMBL cdna:known chromosome:CEL140:X:16123862:16128780:-1 gene:ZK1073.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16123877-16124218(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1073.1
Entrez Gene 181689 Entrez gene
SwissProt O02485 EMBL-EBI
WormBase CE03845 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1640883_A_AT dm
DROSOPHILA_2:1633443_S_AT dm
DROSGENOME1:151855_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
30154 cell differentiation inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92227 Hypothetical protein ZK1073.1 [Caenorhabditis elegans] ref|NP_510634.1| ZK1073.1 [Caenorhabditis elegans] sp|O02485|YDJ1_CAEEL Hypothetical protein ZK1073.1 in chromosome X 0.0
blast CAE69993 Hypothetical protein CBG16397 [Caenorhabditis briggsae] 1.0E-180
blast AAF51958 CG2082-PA, isoform A [Drosophila melanogaster] ref|NP_730998.1| CG2082-PA, isoform A [Drosophila melanogaster] 2.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR004142 EMBL-EBI Ndr family 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:175310_S_AT
ttccttcaaatattcaatctatcttctatcttatactatcggcattctcaatttcaacgc
aaccttttcagttgagtttctctatacattttacacacacacaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCTTCAAATATTCAATCTATCTT 315 699 198 Antisense
ATATTCAATCTATCTTCTATCTTAT 542 19 207 Antisense
CTATCTTCTATCTTATACTATCGGC 447 223 216 Antisense
ATCTTATACTATCGGCATTCTCAAT 412 31 225 Antisense
CTATCGGCATTCTCAATTTCAACGC 150 225 233 Antisense
CGGCATTCTCAATTTCAACGCAACC 696 241 237 Antisense
CATTCTCAATTTCAACGCAACCTTT 657 215 240 Antisense
CTCAATTTCAACGCAACCTTTTCAG 648 225 244 Antisense
AACCTTTTCAGTTGAGTTTCTCTAT 7 147 258 Antisense
GTTTCTCTATACATTTTACACACAC 261 451 273 Antisense
TCTATACATTTTACACACACACACA 391 615 278 Antisense
Sequence Source Affymetrix Proprietary Database