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[175309_at]

Description AV183945_rc /REP_DB=TREMBL Accession /GB=AV183945 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk658b7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 28      4grp_highest_8_8 > 36      4grp_high_8_8 > 08      6grp_highest_nonorm > 60      6grp_total > 27      4grp_total > 39      6grp_highest_sub > De      6grp_cgc > 05      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 271
1 2 3 4 range
A 415.5
(3)
P 		392.6
(-2.8)
P 		414.4
(2.7)
P 		391.7
(-3)
P 		24
B 551.8
(3)
P 		281
(-3)
P 		458.4
(0.9)
P 		415.5
(-0)
P 		271
C 503.8
(3)
P 		375
(-3)
P 		375.4
(-3)
P 		460.3
(1)
P 		129
avr 490.4
(3) 		349.5
(-3) 		416.1
(-0.2) 		422.5
(0.1) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 537
1 2 3 4 5 6 range
A 719.4
(3)
P 		424.4
(-0.8)
P 		379.2
(-1.3)
P 		248.5
(-3)
P 		365.1
(-1.5)
P 		424.7
(-0.8)
P 		471
B 628.5
(3)
P 		445.8
(-0.3)
P 		293.6
(-3)
P 		368.5
(-1.7)
P 		296.3
(-3)
P 		337.2
(-2.2)
P 		335
C 339
(1.9)
P 		373.4
(3)
P 		313
(1.1)
P 		182.6
(-3)
P 		330.2
(1.6)
P 		356.9
(2.5)
P 		191
avr 562.3
(3) 		414.5
(0) 		328.6
(-1.7) 		266.5
(-3) 		330.5
(-1.7) 		372.9
(-0.8) 		296
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 151.3
(3)
P 		85.2
(-1.2)
P 		108.3
(0.3)
P 		57.3
(-3)
P 		94
B 176
(3)
P 		69.4
(-3)
P 		106.2
(-0.9)
P 		88.5
(-1.9)
P 		107
C 166.8
(3)
P 		107.8
(-1)
P 		130.8
(0.6)
P 		77.6
(-3)
P 		89
avr 164.7
(3) 		87.5
(-2.1) 		115.1
(-0.3) 		74.5
(-3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 182
1 2 3 4 5 6 range
A 132.6
(1.8)
P 		150.9
(3)
P 		82.6
(-1.7)
P 		63
(-3)
P 		110.2
(0.2)
P 		103.4
(-0.2)
P 		88
B 218.7
(3)
P 		148.4
(0.1)
P 		71.3
(-3)
P 		97.6
(-1.9)
P 		120.4
(-1)
P 		125.8
(-0.8)
P 		147
C 125.6
(3)
P 		113.9
(2.2)
P 		79.7
(-0.1)
P 		36.7
(-3)
P 		106.9
(1.7)
P 		119.5
(2.6)
P 		89
avr 159
(3) 		137.7
(1.6) 		77.9
(-2.2) 		65.8
(-3) 		112.5
(0) 		116.2
(0.2) 		93
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175309_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22317
Sequence Type Exemplar sequence
Representative Public ID AV183945 NCBI
Target Description AV183945_rc /REP_DB=TREMBL Accession /GB=AV183945 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk658b7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F53H4.1 ENSEMBL cdna:known chromosome:CEL140:X:15861277:15865829:-1 gene:F53H4.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000026511 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15861286-15861568(-) 100.0 100.0
Public Domain and Genome References
Ensembl F53H4.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03135 Hypothetical protein F53H4.1 [Caenorhabditis elegans] ref|NP_510607.2| human CSB (Cockayne Syndrome B) homolog family member (csb-1) [Caenorhabditis elegans] 0.0
blast CAE69733 Hypothetical protein CBG16004 [Caenorhabditis briggsae] 0.0
blast CAD89731 Hypothetical protein F53H4.6 [Caenorhabditis elegans] ref|NP_001024706.1| F53H4.6 [Caenorhabditis elegans] 1.0E-119
Protein Domains
Database ID Description E-Value
Pfam IPR000330 EMBL-EBI SNF2 related domain 5.5E-76
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 8.7E-22
Sequence
Target Sequence 
>C. ELEGANS:175309_AT
gcatttgctcccattattcattgattcatttttcacactgataatttgaatcccccagcc
ccaaattgctaaacctgccttttatatttattgctttttacccattttgccactgttatt
atattgcacatttatcatatttcatcactattatattataatcatttcataataccccca
tcaaagccaagaaggcttctcccacaagatctcgttatcagatcttttttccatagtatc
acgcttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATTTGCTCCCATTATTCATTGAT 249 309 16 Antisense
ACTGATAATTTGAATCCCCCAGCCC 69 99 52 Antisense
CCAGCCCCAAATTGCTAAACCTGCC 494 265 70 Antisense
AAACCTGCCTTTTATATTTATTGCT 645 125 86 Antisense
TATTGCTTTTTACCCATTTTGCCAC 405 665 104 Antisense
TTACCCATTTTGCCACTGTTATTAT 283 683 113 Antisense
TAATCATTTCATAATACCCCCATCA 577 635 174 Antisense
ATACCCCCATCAAAGCCAAGAAGGC 478 23 187 Antisense
TTCTCCCACAAGATCTCGTTATCAG 521 693 212 Antisense
TCTCGTTATCAGATCTTTTTTCCAT 427 611 225 Antisense
CTTTTTTCCATAGTATCACGCTTCT 233 223 239 Antisense
Sequence Source Affymetrix Proprietary Database