[Home] | [Total List]

[175307_s_at]

Description AU116093_rc /REP_DB=TREMBL Accession /GB=AU116093 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk740e7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 63      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 44      6grp_total > 63      4grp_total > 54      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 621
1 2 3 4 range
A 1542.7
(2.7)
P 		1565.7
(3)
P 		1313.4
(-0.4)
P 		1114.6
(-3)
P 		451
B 1736
(3)
P 		1317.2
(-3)
P 		1429.3
(-1.4)
P 		1422.3
(-1.5)
P 		419
C 1474.2
(3)
P 		1348.3
(-3)
P 		1384.1
(-1.3)
P 		1398.7
(-0.6)
P 		126
avr 1584.3
(3) 		1410.4
(-0.8) 		1375.6
(-1.6) 		1311.9
(-3) 		272

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1730
1 2 3 4 5 6 range
A 1152.5
(-3)
P 		1687.4
(-1)
P 		2775.4
(3)
P 		2270.6
(1.1)
P 		1543.4
(-1.6)
P 		1484.9
(-1.8)
P 		1623
B 1141.8
(-3)
P 		1869.3
(-0.5)
P 		2871.6
(3)
P 		1887.9
(-0.4)
P 		1896.7
(-0.4)
P 		2034.9
(0.1)
P 		1730
C 1402.7
(-3)
P 		1900.4
(0.9)
P 		2160.1
(3)
P 		2010.1
(1.8)
P 		1723.4
(-0.5)
P 		1768.2
(-0.1)
P 		757
avr 1232.3
(-3) 		1819
(-0.4) 		2602.4
(3) 		2056.2
(0.6) 		1721.2
(-0.9) 		1762.7
(-0.7) 		1370
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 399
1 2 3 4 range
A 561.7
(3)
P 		339.9
(-0.3)
P 		343.3
(-0.3)
P 		163.1
(-3)
P 		399
B 553.6
(3)
P 		325.3
(-2.5)
P 		331.2
(-2.3)
P 		303.1
(-3)
P 		251
C 488
(3)
P 		387.7
(0.6)
P 		482.4
(2.9)
P 		235.8
(-3)
P 		252
avr 534.4
(3) 		351
(-0.7) 		385.6
(0) 		234
(-3) 		300

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 558
1 2 3 4 5 6 range
A 212.5
(-3)
P 		600.1
(2.9)
P 		604.4
(3)
P 		575.9
(2.6)
P 		465.7
(0.9)
P 		361.5
(-0.7)
P 		392
B 397.3
(-3)
P 		622.2
(0.6)
P 		697.3
(1.8)
P 		500
(-1.3)
P 		770.6
(3)
P 		758.8
(2.8)
P 		373
C 519.9
(0.7)
P 		579.9
(2.6)
P 		549.8
(1.7)
P 		404.2
(-3)
P 		557.7
(1.9)
P 		591.9
(3)
P 		188
avr 376.6
(-3) 		600.7
(2.6) 		617.2
(3) 		493.4
(-0.1) 		598
(2.5) 		570.7
(1.8) 		241
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175307_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20124
Sequence Type Exemplar sequence
Representative Public ID AU116093 NCBI
Target Description AU116093_rc /REP_DB=TREMBL Accession /GB=AU116093 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk740e7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058738(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058738 NCBI Caenorhabditis elegans W01B11.6a (W01B11.6) mRNA, complete cds. 11/11 None
GENEFINDER00000027455 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3293246:3294348:-1 11/11 None
W01B11.6a.1 ENSEMBL cdna:known chromosome:CEL140:I:3293169:3294357:-1 gene:W01B11.6 11/11 None
W01B11.6a.2 ENSEMBL cdna:known chromosome:CEL140:I:3293175:3294359:-1 gene:W01B11.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027451 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3293249-3294302(-) 100.0 100.0
Public Domain and Genome References
Ensembl W01B11.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491139 W01B11.6a [Caenorhabditis elegans] gb|AAK21479.1| Hypothetical protein W01B11.6a [Caenorhabditis elegans] 4.0E-60
blast CAE68987 Hypothetical protein CBG14973 [Caenorhabditis briggsae] 9.0E-49
blast T32946 hypothetical protein W01B11.6 - Caenorhabditis elegans 4.0E-35
Sequence
Target Sequence 
>C. ELEGANS:175307_S_AT
aaggcaatctactacttttacggagagcgttgcccgtcatgcgagagtatcaaaccacta
ttcgatgatttgtgtaaaaagtacgagaagaccgcattggtctacacgtatccgtgctat
aatgatgatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGCAATCTACTACTTTTACGGAG 180 159 33 Antisense
AATCTACTACTTTTACGGAGAGCGT 77 167 38 Antisense
TTTACGGAGAGCGTTGCCCGTCATG 451 665 49 Antisense
GTTGCCCGTCATGCGAGAGTATCAA 146 441 61 Antisense
GCCCGTCATGCGAGAGTATCAAACC 132 287 64 Antisense
GCGAGAGTATCAAACCACTATTCGA 446 287 73 Antisense
AAACCACTATTCGATGATTTGTGTA 491 125 84 Antisense
AAAGTACGAGAAGACCGCATTGGTC 61 111 110 Antisense
CGCATTGGTCTACACGTATCCGTGC 317 251 125 Antisense
TGGTCTACACGTATCCGTGCTATAA 114 553 130 Antisense
ACGTATCCGTGCTATAATGATGATC 436 93 138 Antisense
Sequence Source Affymetrix Proprietary Database