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[175306_at]

Description AV177188_rc /REP_DB=TREMBL Accession /GB=AV177188 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk525e7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 36      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 80      6grp_total > 37      4grp_total > 30      6grp_highest_sub > Cu      6grp_cgc > 16      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 184
1 2 3 4 range
A 213.3
(3)
P 		164.8
(-0)
P 		117.5
(-3)
P 		190.2
(1.6)
P 		96
B 255
(3)
P 		95.4
(-2.2)
P 		71.3
(-3)
P 		171
(0.3)
P 		184
C 173.8
(3)
P 		143.7
(-1.3)
P 		132.1
(-3)
P 		163.6
(1.5)
P 		42
avr 214
(3) 		134.6
(-1.5) 		107
(-3) 		174.9
(0.8) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 235
1 2 3 4 5 6 range
A 286.8
(3)
P 		127.1
(-2.1)
P 		224.6
(1)
P 		98.2
(-3)
P 		185.8
(-0.2)
P 		192.7
(0)
P 		189
B 276.8
(3)
P 		230.3
(1)
P 		139.5
(-3)
P 		226.3
(0.8)
P 		164.8
(-1.9)
P 		230.3
(1)
P 		137
C 239
(0.5)
P 		333.4
(3)
P 		108.5
(-3)
P 		156.9
(-1.7)
P 		112.1
(-2.9)
P 		235.3
(0.4)
P 		225
avr 267.5
(3) 		230.3
(1) 		157.5
(-2.8) 		160.5
(-2.7) 		154.2
(-3) 		219.4
(0.5) 		113
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 77.7
(3)
P 		35.8
(-2)
P 		30.7
(-2.7)
P 		27.8
(-3)
P 		50
B 81.3
(3)
P 		23.6
(-2.3)
P 		16.5
(-3)
P 		36.4
(-1.2)
P 		65
C 57.5
(3)
P 		41.3
(-0.3)
P 		46
(0.7)
P 		27.6
(-3)
P 		30
avr 72.2
(3) 		33.6
(-2.6) 		31.1
(-2.9) 		30.6
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 52.9
(2.4)
P 		45.2
(0.9)
P 		48.9
(1.6)
P 		24.9
(-3)
P 		56.1
(3)
P 		46.9
(1.2)
P 		31
B 96.3
(3)
P 		76.7
(1.1)
P 		33.9
(-3)
P 		59.9
(-0.5)
P 		67
(0.2)
P 		85.9
(2)
P 		62
C 88.6
(1.9)
P 		101.7
(3)
P 		27.6
(-3)
P 		31.5
(-2.7)
P 		36.3
(-2.3)
P 		78.8
(1.1)
P 		74
avr 79.3
(3) 		74.5
(2.3) 		36.8
(-3) 		38.8
(-2.7) 		53.1
(-0.7) 		70.5
(1.8) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175306_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22442
Sequence Type Exemplar sequence
Representative Public ID AV177188 NCBI
Target Description AV177188_rc /REP_DB=TREMBL Accession /GB=AV177188 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk525e7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171658(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171658 NCBI Caenorhabditis elegans Endophilin-Related Protein family member (erp-1) (erp-1) mRNA, complete cds. 11/11 None
F35A5.8b ENSEMBL cdna:known chromosome:CEL140:X:3800750:3802751:-1 gene:F35A5.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180667 2 1 NM_171657 179774_s_at (11)
NM_171658 175306_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3800795-3801078(-) 100.0 100.0
Public Domain and Genome References
Ensembl F35A5.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL32215 Endophilin-related protein protein 1, isoform b [Caenorhabditis elegans] ref|NP_741757.1| Endophilin-Related Protein family member (erp-1) [Caenorhabditis elegans] 1.0E-155
blast AAB52640 Endophilin-related protein protein 1, isoform a [Caenorhabditis elegans] ref|NP_741756.1| Endophilin-Related Protein family member (erp-1) [Caenorhabditis elegans] 1.0E-146
blast CAE68486 Hypothetical protein CBG14288 [Caenorhabditis briggsae] 1.0E-140
Sequence
Target Sequence 
>C. ELEGANS:175306_AT
ttttacttaacattacttccttctgagtaatccagtgtcattcaaattcgccaagaaatt
caatattagctcaagttttcgatattcttaaattttcaatgtattctgtatgtattatat
tgtaatgtatttcatattttaacagctcccggtcatttccaccaatcgataagcataatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTACTTAACATTACTTCCTTCTG 527 671 38 Antisense
TACTTAACATTACTTCCTTCTGAGT 600 643 41 Antisense
ACTTCCTTCTGAGTAATCCAGTGTC 291 103 52 Antisense
AATCCAGTGTCATTCAAATTCGCCA 559 167 66 Antisense
CAGTGTCATTCAAATTCGCCAAGAA 589 207 70 Antisense
CAATATTAGCTCAAGTTTTCGATAT 685 179 98 Antisense
TTTTCGATATTCTTAAATTTTCAAT 288 677 113 Antisense
TTCAATGTATTCTGTATGTATTATA 498 685 132 Antisense
TATTTTAACAGCTCCCGGTCATTTC 262 625 172 Antisense
GGTCATTTCCACCAATCGATAAGCA 403 503 188 Antisense
TTTCCACCAATCGATAAGCATAATT 120 669 193 Antisense
Sequence Source Affymetrix Proprietary Database