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[175305_at]

Description AV200154_rc /REP_DB=TREMBL Accession /GB=AV200154 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk557f1 : 3prime end, single read.
Cluster 6grp_total > 01      4grp_total > 11      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 253
1 2 3 4 range
A 62.1
(-1.7)
A 		67.3
(-1.6)
A 		16.9
(-3)
A 		233.1
(3)
P 		216
B 60.7
(2.7)
A 		61.8
(3)
A 		36.5
(-3)
A 		61
(2.8)
P 		25
C 51.8
(-2.6)
P 		37.6
(-3)
A 		56.1
(-2.5)
A 		269.5
(3)
P 		232
avr 58.2
(-2.1) 		55.6
(-2.2) 		36.5
(-3) 		187.9
(3) 		151

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 65.2
(3)
P 		36.1
(-1.7)
A 		47.2
(0.1)
A 		31.5
(-2.4)
A 		51.9
(0.9)
P 		28
(-3)
A 		37
B 34.6
(-1.7)
A 		52.3
(3)
A 		35
(-1.6)
A 		34.6
(-1.7)
A 		29.6
(-3)
A 		30.9
(-2.7)
P 		23
C 16.3
(-2.3)
A 		95.9
(3)
M 		6.9
(-2.9)
A 		5.3
(-3)
A 		23
(-1.8)
A 		61.1
(0.7)
P 		91
avr 38.7
(-0.6) 		61.4
(3) 		29.7
(-2.1) 		23.8
(-3) 		34.8
(-1.2) 		40
(-0.4) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 22.6
(0.7)
A 		14.6
(-0.9)
A 		4.4
(-3)
A 		34.1
(3)
P 		30
B 19.4
(3)
A 		15.3
(0.8)
A 		8.4
(-3)
A 		13
(-0.5)
P 		11
C 17.1
(-1.9)
P 		10.8
(-3)
A 		19.5
(-1.5)
A 		45.4
(3)
P 		35
avr 19.7
(-0.3) 		13.6
(-2.2) 		10.8
(-3) 		30.8
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 12
(0.5)
P 		12.8
(1)
A 		10.3
(-0.6)
A 		8
(-2.2)
A 		15.7
(3)
P 		6.8
(-3)
A 		9
B 12
(-0.6)
A 		17.4
(3)
A 		8.5
(-3)
A 		9.2
(-2.5)
A 		12
(-0.6)
A 		11.5
(-1)
P 		9
C 6
(-2)
A 		29.3
(3)
M 		1.7
(-2.9)
A 		1.1
(-3)
A 		7.4
(-1.7)
A 		20.4
(1.1)
P 		28
avr 10
(-1.3) 		19.8
(3) 		6.8
(-2.7) 		6.1
(-3) 		11.7
(-0.5) 		12.9
(-0) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175305_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21256
Sequence Type Exemplar sequence
Representative Public ID AV200154 NCBI
Target Description AV200154_rc /REP_DB=TREMBL Accession /GB=AV200154 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk557f1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV200154
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV200154 AV200154_rc /REP_DB=TREMBL Accession /GB=AV200154 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk557f1 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:406741-407023(-) 57.45 100.0
Sequence
Target Sequence 
>C. ELEGANS:175305_AT
aaatggccgctgaaatttgtcggggactcggccatggcctagaaacctttttgcctcgtc
cctcgttcgaataaaatttgcagtggtgagttttcaggcaaaactccagaaccaagctca
cggtgggctctcaatgatcttaaaatagcactgtaaggaagaactttaacgatctaacga
agcaattttccatattcactttggtagctcatatctccatggataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGGCCGCTGAAATTTGTCGGGG 357 121 37 Antisense
TGAAATTTGTCGGGGACTCGGCCAT 136 571 47 Antisense
TGGCCTAGAAACCTTTTTGCCTCGT 319 543 71 Antisense
TCGTCCCTCGTTCGAATAAAATTTG 384 605 92 Antisense
AATTTGCAGTGGTGAGTTTTCAGGC 383 173 111 Antisense
TTTTCAGGCAAAACTCCAGAACCAA 572 675 127 Antisense
TCACGGTGGGCTCTCAATGATCTTA 67 625 154 Antisense
GAACTTTAACGATCTAACGAAGCAA 559 317 197 Antisense
AACGAAGCAATTTTCCATATTCACT 532 145 212 Antisense
TCCATATTCACTTTGGTAGCTCATA 328 591 225 Antisense
TGGTAGCTCATATCTCCATGGATAA 217 551 238 Antisense
Sequence Source Affymetrix Proprietary Database