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[175304_at]

Description AU113360_rc /REP_DB=TREMBL Accession /GB=AU113360 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk706e7 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 88      4grp_high_8_8 > 14      6grp_total > 87      4grp_total > 02      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 41.1
(-1.6)
A 		48.8
(-0.7)
P 		29.1
(-3)
A 		81
(3)
P 		52
B 36.6
(-1.7)
P 		17.5
(-3)
A 		45
(-1.1)
P 		102.7
(3)
P 		85
C 34
(-2.8)
P 		38.3
(-2.4)
P 		32
(-3)
P 		96.2
(3)
P 		64
avr 37.2
(-2.8) 		34.9
(-3) 		35.4
(-2.9) 		93.3
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 421
1 2 3 4 5 6 range
A 9.4
(-3)
A 		44.8
(-2.4)
A 		45.9
(-2.3)
P 		80.2
(-1.7)
P 		195.3
(0.4)
P 		338.5
(3)
P 		329
B 34.4
(-3)
P 		51.7
(-2.7)
P 		63.5
(-2.4)
P 		93.7
(-1.9)
P 		235.6
(0.8)
P 		348.8
(3)
P 		314
C 51
(-2.9)
P 		46.2
(-3)
P 		68
(-2.7)
P 		69
(-2.6)
P 		225.4
(-0.2)
P 		430.7
(3)
P 		385
avr 31.6
(-3) 		47.6
(-2.7) 		59.1
(-2.5) 		81
(-2.1) 		218.8
(0.3) 		372.7
(3) 		341
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 15
(3)
A 		10.6
(-0.6)
P 		7.6
(-3)
A 		11.9
(0.5)
P 		7
B 11.7
(-0.5)
P 		4.3
(-3)
A 		10.4
(-0.9)
P 		21.9
(3)
P 		18
C 11.2
(-2.8)
P 		11
(-3)
P 		11.2
(-2.8)
P 		16.2
(3)
P 		5
avr 12.6
(-0) 		8.6
(-3) 		9.7
(-2.2) 		16.7
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 1.7
(-3)
A 		15.9
(-1.9)
A 		10
(-2.4)
P 		20.3
(-1.6)
P 		58.9
(1.3)
P 		82.4
(3)
P 		81
B 12
(-3)
P 		17.2
(-2.7)
P 		15.4
(-2.8)
P 		24.8
(-2.3)
P 		95.7
(1.3)
P 		130.1
(3)
P 		118
C 18.9
(-2.8)
P 		14.1
(-3)
P 		17.3
(-2.8)
P 		13.9
(-3)
P 		72.9
(-0.3)
P 		144.2
(3)
P 		130
avr 10.9
(-3) 		15.7
(-2.7) 		14.2
(-2.8) 		19.7
(-2.5) 		75.8
(0.6) 		118.9
(3) 		108
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175304_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20550
Sequence Type Exemplar sequence
Representative Public ID AU113360 NCBI
Target Description AU113360_rc /REP_DB=TREMBL Accession /GB=AU113360 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk706e7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063475(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063475 NCBI Caenorhabditis elegans F07H5.10 (F07H5.10) mRNA, complete cds. 11/11 A 
F07H5.10 ENSEMBL cdna:known chromosome:CEL140:II:8807108:8808499:-1 gene:F07H5.10 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026210 3/11 Cross Hyb Matching Probes None
GENEFINDER00000026213 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8807114-8807450(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F07H5.10
Entrez Gene 174408 Entrez gene
SwissProt Q19174 EMBL-EBI
WormBase CE28906 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92656 Hypothetical protein F07H5.10 [Caenorhabditis elegans] ref|NP_495876.1| F07H5.10 [Caenorhabditis elegans] 0.0
blast CAE59738 Hypothetical protein CBG03179 [Caenorhabditis briggsae] 1.0E-106
Sequence
Target Sequence 
>C. ELEGANS:175304_AT
agacaaaataatcggtgctgaaggcgatatgtgcatggtaaaatcagatggctccactcc
gatcagtgtgacattgacaacaagagaaagcctgaaaagaagtccattctggtgacctgg
caatgaacaacgctacagcatttattacacacgtgcatcatcatatcgggattcccaaaa
tttcattcgatctaactaattctaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGACAAAATAATCGGTGCTGAAGGC 444 71 55 Antisense
GGTGCTGAAGGCGATATGTGCATGG 22 503 68 Antisense
GGCGATATGTGCATGGTAAAATCAG 372 539 77 Antisense
GTGACCTGGCAATGAACAACGCTAC 201 481 166 Antisense
AACGCTACAGCATTTATTACACACG 601 145 183 Antisense
ACAGCATTTATTACACACGTGCATC 432 109 189 Antisense
ACACACGTGCATCATCATATCGGGA 439 111 201 Antisense
GTGCATCATCATATCGGGATTCCCA 100 479 207 Antisense
ATCGGGATTCCCAAAATTTCATTCG 258 3 219 Antisense
GATTCCCAAAATTTCATTCGATCTA 422 431 224 Antisense
TTTCATTCGATCTAACTAATTCTAA 159 673 235 Antisense
Sequence Source Affymetrix Proprietary Database