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[175303_at]

Description AU116146_rc /REP_DB=TREMBL Accession /GB=AU116146 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk741b5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 99      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 78      6grp_total > 95      4grp_total > 04      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 935
1 2 3 4 range
A 1309.6
(-1.4)
P 		1066.8
(-3)
P 		1083
(-2.9)
P 		2001.3
(3)
P 		935
B 1302.7
(-3)
P 		1304.4
(-3)
P 		1304.2
(-3)
P 		1639.3
(3)
P 		337
C 1494.5
(-0.3)
P 		1320.9
(-1.5)
P 		1111.5
(-3)
P 		1975.9
(3)
P 		864
avr 1368.9
(-1.3) 		1230.7
(-2.5) 		1166.2
(-3) 		1872.2
(3) 		706

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1492
1 2 3 4 5 6 range
A 1510.3
(-1.6)
P 		1197.9
(-3)
P 		1294.1
(-2.6)
P 		1669.4
(-0.8)
P 		2507.2
(3)
P 		1838.3
(-0.1)
P 		1309
B 1624.1
(-0.2)
P 		1247.2
(-1.9)
P 		1015.3
(-3)
P 		1849.6
(0.8)
P 		2318
(3)
P 		1933
(1.2)
P 		1303
C 1156
(-3)
P 		1244.2
(-2.4)
P 		1219.1
(-2.6)
P 		1994.2
(2.3)
P 		2040.2
(2.6)
P 		2109.7
(3)
P 		954
avr 1430.1
(-1.6) 		1229.8
(-2.7) 		1176.2
(-3) 		1837.7
(0.6) 		2288.5
(3) 		1960.3
(1.2) 		1112
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 263
1 2 3 4 range
A 476.8
(3)
P 		231.6
(-3)
P 		283.1
(-1.7)
P 		293
(-1.5)
P 		245
B 415.4
(3)
P 		322.2
(-1.9)
P 		302.2
(-3)
P 		349.3
(-0.5)
P 		113
C 494.7
(3)
P 		379.8
(-1.3)
P 		387.4
(-1)
P 		333.2
(-3)
P 		162
avr 462.3
(3) 		311.2
(-3) 		324.2
(-2.5) 		325.2
(-2.4) 		151

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 695
1 2 3 4 5 6 range
A 278.4
(-3)
P 		426
(-1.1)
P 		281.8
(-3)
P 		423.4
(-1.2)
P 		756.6
(3)
P 		447.6
(-0.9)
P 		478
B 565.1
(-0.3)
P 		415.1
(-1.5)
P 		246.5
(-3)
P 		489.9
(-0.9)
P 		941.8
(3)
P 		720.8
(1.1)
P 		695
C 428.5
(-1.2)
P 		379.6
(-2)
P 		310.3
(-3)
P 		401
(-1.6)
P 		660.2
(2.3)
P 		706.3
(3)
P 		396
avr 424
(-1.3) 		406.9
(-1.5) 		279.5
(-3) 		438.1
(-1.1) 		786.2
(3) 		624.9
(1.1) 		507
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175303_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20759
Sequence Type Exemplar sequence
Representative Public ID AU116146 NCBI
Target Description AU116146_rc /REP_DB=TREMBL Accession /GB=AU116146 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk741b5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063148(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063148 NCBI Caenorhabditis elegans C07D10.2b (C07D10.2) mRNA, complete cds. 11/11 None
C07D10.2b.1 ENSEMBL cdna:known chromosome:CEL140:II:7394882:7397256:1 gene:C07D10.2 11/11 None
C07D10.2b.2 ENSEMBL cdna:known chromosome:CEL140:II:7394884:7397256:1 gene:C07D10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174210 2 1 NM_063148 175303_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7396919-7397198(+) 100.0 100.0
Public Domain and Genome References
Ensembl C07D10.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL00851 Hypothetical protein C07D10.2b [Caenorhabditis elegans] ref|NP_495549.1| C07D10.2b [Caenorhabditis elegans] 0.0
blast T15442 hypothetical protein C07D10.2 - Caenorhabditis elegans 0.0
blast AAK31400 Hypothetical protein C07D10.2a [Caenorhabditis elegans] ref|NP_495550.1| C07D10.2a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 4.2E-33
Sequence
Target Sequence 
>C. ELEGANS:175303_AT
ttgtgagtcacgacgtttcgacctctttttcattttctgcccatctcatgtcaaatgttt
ttatcacgtcgtccatattgttgctaggacggtttcgtgcaatttctcaattcagattgt
caaccgtacggttctaaagcccccattgactgatgaggtctccatccttttttgtgactt
attcattatctcgtttcgaattaccacaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTGAGTCACGACGTTTCGACCTC 622 703 21 Antisense
TTTCTGCCCATCTCATGTCAAATGT 333 671 54 Antisense
CAAATGTTTTTATCACGTCGTCCAT 431 191 72 Antisense
TCACGTCGTCCATATTGTTGCTAGG 413 625 84 Antisense
GACGGTTTCGTGCAATTTCTCAATT 352 377 108 Antisense
ATTCAGATTGTCAACCGTACGGTTC 710 11 130 Antisense
TTCTAAAGCCCCCATTGACTGATGA 166 687 152 Antisense
TGACTGATGAGGTCTCCATCCTTTT 445 569 167 Antisense
TCTCCATCCTTTTTTGTGACTTATT 214 611 179 Antisense
GTGACTTATTCATTATCTCGTTTCG 362 483 194 Antisense
TTATCTCGTTTCGAATTACCACAAA 410 679 206 Antisense
Sequence Source Affymetrix Proprietary Database