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[175302_at]

Description AV175817_rc /REP_DB=TREMBL Accession /GB=AV175817 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk487b7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 09      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 42      6grp_total > 03      4grp_total > 59      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 971
1 2 3 4 range
A 763.1
(0.9)
P 		1100.6
(3)
P 		1043
(2.6)
P 		129.3
(-3)
P 		971
B 609.1
(0.7)
P 		808.5
(2.3)
P 		900.6
(3)
P 		139.9
(-3)
P 		761
C 595.5
(-0.2)
P 		955.5
(2.2)
P 		1067.7
(3)
P 		187.3
(-3)
P 		880
avr 655.9
(0.5) 		954.9
(2.7) 		1003.8
(3) 		152.2
(-3) 		852

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 999
1 2 3 4 5 6 range
A 951.9
(1.4)
P 		1007.6
(1.8)
P 		645.6
(-0.8)
P 		794.5
(0.2)
P 		1177.5
(3)
P 		343.7
(-3)
P 		834
B 946.9
(1.2)
P 		949.6
(1.2)
P 		733.9
(-0.2)
P 		1225.2
(3)
P 		907.5
(0.9)
P 		314.7
(-3)
P 		911
C 1089.2
(3)
P 		924.3
(1.9)
P 		933
(1.9)
P 		1065.4
(2.8)
P 		1018.9
(2.5)
P 		226
(-3)
P 		863
avr 996
(2.7) 		960.5
(2.4) 		770.8
(0.9) 		1028.4
(2.9) 		1034.6
(3) 		294.8
(-3) 		740
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 353
1 2 3 4 range
A 277.8
(3)
P 		238.9
(2.1)
P 		272.7
(2.9)
P 		18.9
(-3)
P 		259
B 194.3
(2.5)
P 		199.7
(2.7)
P 		208.7
(3)
P 		29.8
(-3)
P 		179
C 197.1
(-0.1)
P 		274.7
(1.3)
P 		372.1
(3)
P 		31.6
(-3)
P 		341
avr 223.1
(1.6) 		237.8
(1.9) 		284.5
(3) 		26.8
(-3) 		258

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 328
1 2 3 4 5 6 range
A 175.5
(-1)
P 		358.3
(3)
P 		140.6
(-1.8)
P 		201.5
(-0.4)
P 		355.3
(2.9)
P 		83.7
(-3)
P 		275
B 329.5
(2.1)
P 		316.1
(1.7)
P 		178.2
(-1.5)
P 		324.5
(1.9)
P 		368.7
(3)
P 		117.3
(-3)
P 		251
C 403.7
(3)
P 		282
(0.8)
P 		237.5
(-0)
P 		214.3
(-0.5)
P 		329.7
(1.6)
P 		75.6
(-3)
P 		328
avr 302.9
(1.9) 		318.8
(2.2) 		185.4
(-0.8) 		246.8
(0.6) 		351.2
(3) 		92.2
(-3) 		259
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175302_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20419
Sequence Type Exemplar sequence
Representative Public ID AV175817 NCBI
Target Description AV175817_rc /REP_DB=TREMBL Accession /GB=AV175817 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk487b7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F25D7.3 ENSEMBL cdna:known chromosome:CEL140:I:10417481:10422848:1 gene:F25D7.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10422473-10422750(+) 92.42 100.0
Public Domain and Genome References
Ensembl F25D7.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01695 Hypothetical protein F25D7.3 [Caenorhabditis elegans] ref|NP_492723.1| Blimp1 (B Lymphocyte-induced Maturation Protein-1) homolog family member (blmp-1) [Caenorhabditis elegans] 0.0
blast CAE58934 Hypothetical protein CBG02201 [Caenorhabditis briggsae] 0.0
blast XP_391847 PREDICTED: similar to CG5249-PA [Apis mellifera] 1.0E-69
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 3.0E-7
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.6E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.0E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 2.1E-4
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 2.0E-4
Sequence
Target Sequence 
>C. ELEGANS:175302_AT
gttcaaatagttcgtttctcaaaattatcagatttaatataattatttttttgaaatctt
ccatatacaccgcctaaacctatattatcttttcattctctcattgtctcttgctttatc
agtcccctttcattcttatcactgtcaaaattttctattttttattcaacaatttccatc
aaaatcttccggcatttcaacacacctatctgtgatcatactttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCAAATAGTTCGTTTCTCAAAAT 573 443 33 Antisense
TTTGAAATCTTCCATATACACCGCC 247 667 82 Antisense
ATACACCGCCTAAACCTATATTATC 360 23 97 Antisense
ACCTATATTATCTTTTCATTCTCTC 635 87 110 Antisense
TTATCTTTTCATTCTCTCATTGTCT 186 681 117 Antisense
CCCTTTCATTCTTATCACTGTCAAA 176 259 157 Antisense
TTATCACTGTCAAAATTTTCTATTT 72 681 168 Antisense
ACAATTTCCATCAAAATCTTCCGGC 204 115 201 Antisense
CAAAATCTTCCGGCATTTCAACACA 95 189 212 Antisense
CGGCATTTCAACACACCTATCTGTG 225 243 222 Antisense
ACACCTATCTGTGATCATACTTTCA 647 109 234 Antisense
Sequence Source Affymetrix Proprietary Database