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[175301_at]

Description AV176640_rc /REP_DB=TREMBL Accession /GB=AV176640 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk515h1 : 3prime end, single read.
Cluster 6grp_total > 35      4grp_total > 43      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 3
(-2.9)
A 		21
(3)
A 		2.6
(-3)
A 		3
(-2.9)
A 		18
B 6.1
(3)
A 		3.4
(-0.1)
A 		0.8
(-3)
A 		5.5
(2.3)
A 		5
C 1.5
(-2.9)
A 		6.6
(3)
A 		1.4
(-3)
A 		3.2
(-0.9)
A 		5
avr 3.5
(-1.7) 		10.3
(3) 		1.6
(-3) 		3.9
(-1.4) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 2.7
(-0.5)
A 		3.2
(1.1)
A 		1.9
(-3)
A 		2.3
(-1.7)
A 		3.8
(3)
A 		3.7
(2.7)
A 		2
B 17.1
(3)
A 		3.5
(-2.5)
A 		10.5
(0.3)
A 		2.5
(-2.9)
A 		2.3
(-3)
A 		3.7
(-2.4)
A 		15
C 3.6
(-2.6)
A 		33.7
(3)
A 		1.2
(-3)
A 		1.7
(-2.9)
A 		1.4
(-3)
A 		5.3
(-2.2)
A 		33
avr 7.8
(-0) 		13.5
(3) 		4.5
(-1.8) 		2.2
(-3) 		2.5
(-2.8) 		4.2
(-1.9) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 1.1
(-2)
A 		4.6
(3)
A 		0.7
(-2.6)
A 		0.4
(-3)
A 		4
B 2
(3)
A 		0.8
(-1)
A 		0.2
(-3)
A 		1.2
(0.3)
A 		2
C 0.5
(-3)
A 		1.9
(3)
A 		0.5
(-3)
A 		0.5
(-3)
A 		1
avr 1.2
(-0.8) 		2.4
(3) 		0.5
(-3) 		0.7
(-2.4) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.5
(-2.3)
A 		1.1
(2.3)
A 		0.4
(-3)
A 		0.6
(-1.5)
A 		1.2
(3)
A 		0.9
(0.8)
A 		1
B 6
(3)
A 		1.2
(-2.4)
A 		2.5
(-1)
A 		0.7
(-3)
A 		1
(-2.7)
A 		1.4
(-2.2)
A 		5
C 1.3
(-2.4)
A 		10.3
(3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		0.4
(-2.9)
A 		1.8
(-2.1)
A 		10
avr 2.6
(0.4) 		4.2
(3) 		1.1
(-2) 		0.5
(-3) 		0.9
(-2.4) 		1.4
(-1.5) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175301_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21254
Sequence Type Exemplar sequence
Representative Public ID AV176640 NCBI
Target Description AV176640_rc /REP_DB=TREMBL Accession /GB=AV176640 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk515h1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171057(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171057 NCBI Caenorhabditis elegans T17A3.12 (T17A3.12) mRNA, complete cds. 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
T17A3.12 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:145056-145288(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Entrez Gene 175181 Entrez gene
SwissProt Q8MXF8 EMBL-EBI
WormBase CE31608 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM97950 Hypothetical protein T17A3.12 [Caenorhabditis elegans] ref|NP_741065.1| T17A3.12 [Caenorhabditis elegans] 4.0E-18
Sequence
Target Sequence 
>C. ELEGANS:175301_AT
aggtgtctactcgatcgataacccatcgtctgttggcccaccgtacctccttttccagcc
attcattctcttaacaaccatgacgagcagtttcccaattcttcgataacaatgcaacca
ttgcgactattgttctacgtaatgtcggtaaagccttaccttttatgcaactatttgttt
ggatgtagttctagatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGTGTCTACTCGATCGATAACCCA 44 59 13 Antisense
GATCGATAACCCATCGTCTGTTGGC 306 417 25 Antisense
TTTCCAGCCATTCATTCTCTTAACA 641 669 64 Antisense
GCCATTCATTCTCTTAACAACCATG 291 279 70 Antisense
ACAACCATGACGAGCAGTTTCCCAA 410 111 86 Antisense
AATTCTTCGATAACAATGCAACCAT 258 177 109 Antisense
GCAACCATTGCGACTATTGTTCTAC 56 321 126 Antisense
GACTATTGTTCTACGTAATGTCGGT 198 373 137 Antisense
TCTACGTAATGTCGGTAAAGCCTTA 178 613 146 Antisense
AAGCCTTACCTTTTATGCAACTATT 464 149 163 Antisense
ATTTGTTTGGATGTAGTTCTAGATT 450 17 185 Antisense
Sequence Source Affymetrix Proprietary Database