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[175300_s_at]

Description AU115348_rc /REP_DB=TREMBL Accession /GB=AU115348 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk730h9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 13      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 70      6grp_total > 14      4grp_total > 39      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 293
1 2 3 4 range
A 272.7
(3)
P 		172
(-3)
P 		194.2
(-1.7)
P 		243.1
(1.2)
P 		101
B 320.2
(3)
P 		198.4
(-1.1)
P 		142.6
(-3)
P 		189.1
(-1.4)
P 		178
C 435.5
(3)
P 		204.5
(-3)
P 		239
(-2.1)
P 		269.7
(-1.3)
P 		231
avr 342.8
(3) 		191.6
(-3) 		191.9
(-3) 		234
(-1.3) 		151

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 232
1 2 3 4 5 6 range
A 325.8
(1.1)
P 		390.9
(3)
P 		349.5
(1.8)
P 		227.1
(-1.9)
P 		203
(-2.6)
P 		188.7
(-3)
P 		202
B 420.8
(3)
P 		378
(1.5)
P 		279.8
(-1.8)
P 		286.3
(-1.6)
P 		245.8
(-3)
P 		266.8
(-2.3)
P 		175
C 371.5
(3)
P 		340.1
(1.5)
P 		257.5
(-2.5)
P 		344.6
(1.7)
P 		293.3
(-0.8)
P 		247.2
(-3)
P 		124
avr 372.7
(3) 		369.7
(2.9) 		295.6
(-0.3) 		286
(-0.8) 		247.4
(-2.4) 		234.2
(-3) 		139
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 99.3
(3)
P 		37.3
(-2.8)
P 		50.8
(-1.6)
P 		35.6
(-3)
P 		64
B 102.1
(3)
P 		49
(-1.6)
P 		33
(-3)
P 		40.3
(-2.4)
P 		69
C 144.2
(3)
P 		58.8
(-2.2)
P 		83.3
(-0.7)
P 		45.5
(-3)
P 		99
avr 115.2
(3) 		48.4
(-2.4) 		55.7
(-1.8) 		40.5
(-3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 60.1
(-2.1)
P 		139
(3)
P 		76.1
(-1.1)
P 		57.6
(-2.2)
P 		61.3
(-2)
P 		45.9
(-3)
P 		93
B 146.4
(3)
P 		125.8
(1.4)
P 		68
(-3)
P 		75.8
(-2.4)
P 		99.8
(-0.6)
P 		99.5
(-0.6)
P 		78
C 137.7
(3)
P 		103.8
(0.2)
P 		65.5
(-3)
P 		69.3
(-2.7)
P 		94.9
(-0.6)
P 		82.8
(-1.6)
P 		72
avr 114.7
(2.1) 		122.9
(3) 		69.9
(-2.8) 		67.6
(-3) 		85.3
(-1.1) 		76.1
(-2.1) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175300_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20384
Sequence Type Exemplar sequence
Representative Public ID AU115348 NCBI
Target Description AU115348_rc /REP_DB=TREMBL Accession /GB=AU115348 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk730h9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058966(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058966 NCBI Caenorhabditis elegans C11D9.1 (C11D9.1) mRNA, complete cds. 11/11 A 
SNAP00000002064 ENSEMBL cdna:SNAP chromosome:CEL140:I:4423041:4428007:1 9/11 None
GENEFINDER00000002074 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4423041:4426056:1 11/11 None
C11D9.1 ENSEMBL cdna:known chromosome:CEL140:I:4422033:4426138:1 gene:C11D9.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4425754-4426094(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C11D9.1
Entrez Gene 259373 Entrez gene
SwissProt O01847 EMBL-EBI
WormBase CE37706 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB54205 Hypothetical protein C11D9.1 [Caenorhabditis elegans] ref|NP_491367.2| C11D9.1 [Caenorhabditis elegans] 0.0
blast CAE66830 Hypothetical protein CBG12200 [Caenorhabditis briggsae] 0.0
blast AAH79600 Tiam2 protein [Mus musculus] 2.0E-25
blast AAH79600 Tiam2 protein [Mus musculus] 3.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR000219 EMBL-EBI DH domain 1.0E-13
Pfam IPR000219 EMBL-EBI DH domain 1.0E-13
Pfam IPR000219 EMBL-EBI DH domain 1.0E-13
Sequence
Target Sequence 
>C. ELEGANS:175300_S_AT
atctaaaactttatcatgctgcttttgaaggaccaaatggacaattaagtcccaatccaa
atacagtctacaatattgaatgttgtcaatctcaactgaaacagcatcttatcaaaaata
tcaaaaaagctcgaactttattctctcgagaatcacatcgtccattaagtggatctagtc
aatcggatggtggttatgtgtcagaagtctctaaggaacatcgaaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTAAAACTTTATCATGCTGCTTT 153 33 19 Antisense
TATCATGCTGCTTTTGAAGGACCAA 683 657 30 Antisense
GAATGTTGTCAATCTCAACTGAAAC 372 331 96 Antisense
CTCAACTGAAACAGCATCTTATCAA 510 227 109 Antisense
AAAAGCTCGAACTTTATTCTCTCGA 697 131 143 Antisense
TTCTCTCGAGAATCACATCGTCCAT 114 691 159 Antisense
ATCACATCGTCCATTAAGTGGATCT 26 27 170 Antisense
AAGTGGATCTAGTCAATCGGATGGT 637 157 185 Antisense
GTCAATCGGATGGTGGTTATGTGTC 547 463 196 Antisense
GGTGGTTATGTGTCAGAAGTCTCTA 163 499 207 Antisense
GAAGTCTCTAAGGAACATCGAAATT 240 337 222 Antisense
Sequence Source Affymetrix Proprietary Database