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[175297_at]

Description AU114516_rc /REP_DB=TREMBL Accession /GB=AU114516 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk720b8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 23      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 22      6grp_total > 03      4grp_total > 13      6grp_highest_sub > De      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2907
1 2 3 4 range
A 1726.2
(-0.5)
P 		911.6
(-2.2)
P 		534.1
(-3)
P 		3441.2
(3)
P 		2907
B 1934.1
(-0.1)
P 		838.5
(-2.6)
P 		655.1
(-3)
P 		3322.1
(3)
P 		2667
C 1557.8
(-0.9)
P 		911
(-2.3)
P 		621.8
(-3)
P 		3238.7
(3)
P 		2617
avr 1739.4
(-0.5) 		887
(-2.4) 		603.7
(-3) 		3334
(3) 		2730

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1418
1 2 3 4 5 6 range
A 1762.5
(2.8)
P 		1791.5
(3)
P 		1572.5
(1.9)
P 		1424.9
(1.1)
P 		1356.3
(0.7)
P 		644.8
(-3)
P 		1147
B 1828.1
(1.9)
P 		2062.8
(3)
P 		1774
(1.6)
P 		1787
(1.7)
P 		1263.8
(-0.8)
P 		802
(-3)
P 		1261
C 1686.9
(1.3)
P 		1937.8
(2.6)
P 		1221.9
(-1)
P 		2026.2
(3)
P 		1082.2
(-1.6)
P 		806.4
(-3)
P 		1220
avr 1759.2
(2.1) 		1930.7
(3) 		1522.8
(0.9) 		1746
(2.1) 		1234.1
(-0.5) 		751.1
(-3) 		1180
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 568
1 2 3 4 range
A 628.5
(3)
P 		197.9
(-2.3)
P 		139.6
(-3)
P 		503.7
(1.5)
P 		489
B 616.8
(2)
P 		207.1
(-2.4)
P 		151.8
(-3)
P 		708
(3)
P 		556
C 515.7
(2.4)
P 		261.9
(-2.2)
P 		216.7
(-3)
P 		546.1
(3)
P 		329
avr 587
(3) 		222.3
(-2.2) 		169.4
(-3) 		585.9
(3) 		418

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 530
1 2 3 4 5 6 range
A 324.9
(-0.9)
P 		637.1
(3)
P 		342.5
(-0.7)
P 		361.4
(-0.4)
P 		409.3
(0.2)
P 		157
(-3)
P 		480
B 636.1
(2.2)
P 		686.6
(3)
P 		430.8
(-1)
P 		473.3
(-0.3)
P 		513.5
(0.3)
P 		299.1
(-3)
P 		388
C 625.3
(3)
P 		591.3
(2.4)
P 		311
(-2.3)
P 		407.5
(-0.7)
P 		350.2
(-1.6)
P 		269.9
(-3)
P 		355
avr 528.8
(1.3) 		638.3
(3) 		361.4
(-1.2) 		414.1
(-0.4) 		424.3
(-0.2) 		242
(-3) 		396
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175297_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21262
Sequence Type Exemplar sequence
Representative Public ID AU114516 NCBI
Target Description AU114516_rc /REP_DB=TREMBL Accession /GB=AU114516 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk720b8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069153(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069153 NCBI Caenorhabditis elegans D1046.5 (D1046.5) mRNA, complete cds. 11/11 None
D1046.5 ENSEMBL cdna:known chromosome:CEL140:IV:8956470:8965503:1 gene:D1046.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8965158-8965435(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1046.5
Entrez Gene 259586 Entrez gene
SwissProt Q18936 EMBL-EBI
WormBase CE32845 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1586741_AT similar to G protein-coupled receptor 175 cfa
CANINE_2:CFA.5907.1.A1_AT similar to G protein-coupled receptor 175 cfa
CANINE_2:CFAAFFX.6974.1.S1_AT similar to G protein-coupled receptor 175 cfa
CANINE_2:CFAAFFX.6976.1.S1_S_AT similar to G protein-coupled receptor 175 cfa
CHICKEN:GGA.5952.1.S1_S_AT G protein-coupled receptor 175 gga
CHICKEN:GGA.5952.2.S1_AT Similar to TPRA40 protein gga
HU35KSUBA:RC_AA258572_AT G protein-coupled receptor 175 hs
HG-U133A:218855_AT G protein-coupled receptor 175 hs
HG-U133_PLUS_2:218855_AT G protein-coupled receptor 175 hs
HG-FOCUS:218855_AT G protein-coupled receptor 175 hs
HG-U133A_2:218855_AT G protein-coupled receptor 175 hs
U133_X3P:G7705964_3P_X_AT G protein-coupled receptor 175 hs
HG-U95B:53997_AT G protein-coupled receptor 175 hs
MOUSE430_2:1460276_A_AT G protein-coupled receptor 175 mm
MOE430A:1460276_A_AT G protein-coupled receptor 175 mm
MOUSE430A_2:1460276_A_AT G protein-coupled receptor 175 mm
MG-U74AV2:104131_AT G protein-coupled receptor 175 mm
MG-U74CV2:136130_AT G protein-coupled receptor 175 mm
MU19KSUBA:TC19906_AT G protein-coupled receptor 175, mRNA (cDNA clone MGC:36786 IMAGE:5363085) mm
MU19KSUBB:TC32245_AT G protein-coupled receptor 175, mRNA (cDNA clone MGC:36786 IMAGE:5363085) mm
RG-U34B:RC_AA942683_AT transmembrane domain protein regulated in adipocytes rn
RAE230A:1371635_AT transmembrane domain protein regulated in adipocytes rn
RAT230_2:1371635_AT transmembrane domain protein regulated in adipocytes rn
RAE230A:1369535_AT transmembrane domain protein regulated in adipocytes rn
RAT230_2:1369535_AT transmembrane domain protein regulated in adipocytes rn
RG-U34B:RC_AI045463_AT Transmembrane domain protein regulated in adipocytes rn
Protein Similarities
Method ID Description E-Value
blast CAD59144 Hypothetical protein D1046.5 [Caenorhabditis elegans] emb|CAA92293.2| Hypothetical protein D1046.5 [Caenorhabditis elegans] ref|NP_501554.2| D1046.5 [Caenorhabditis elegans] 0.0
blast CAE74076 Hypothetical protein CBG21730 [Caenorhabditis briggsae] 0.0
blast AAH97163 Hypothetical protein LOC570573 [Danio rerio] ref|NP_001025422.1| hypothetical protein LOC570573 [Danio rerio] 3.0E-45
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501554.2 7 75-94,114-136,151-173,180-202,226-248,261-283,293-314
D1046.5 7 75-94,114-136,151-173,180-202,226-248,261-283,293-314
Sequence
Target Sequence 
>C. ELEGANS:175297_AT
caatcttgattttccatattccccaagtttttaatttcctcccggtcatttctcattctc
acatcctttgggtctcattacgaaaaaaacaccgataattgtcaaaaagattatcacttg
gatcatattgactcctctcgttcattgtctattaatgtgaccggttacctgtatttgtac
atagaataggcactttcaaccaatcatttgattacttgtattactttcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATCTTGATTTTCCATATTCCCCA 693 181 29 Antisense
TTGATTTTCCATATTCCCCAAGTTT 399 705 34 Antisense
TTCTCACATCCTTTGGGTCTCATTA 637 689 84 Antisense
ACATCCTTTGGGTCTCATTACGAAA 183 107 89 Antisense
AAAAGATTATCACTTGGATCATATT 197 133 133 Antisense
TGGATCATATTGACTCCTCTCGTTC 331 551 147 Antisense
CTCCTCTCGTTCATTGTCTATTAAT 491 235 160 Antisense
GTCTATTAATGTGACCGGTTACCTG 57 29 175 Antisense
TGACCGGTTACCTGTATTTGTACAT 360 415 186 Antisense
GAATAGGCACTTTCAACCAATCATT 293 327 212 Antisense
TTTGATTACTTGTATTACTTTCAGA 599 663 235 Antisense
Sequence Source Affymetrix Proprietary Database