[Home] | [Total List]

[175296_at]

Description AU115194_rc /REP_DB=TREMBL Accession /GB=AU115194 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk729a1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 99      4grp_highest_8_8 > 26      4grp_high_8_8 > 57      6grp_highest_nonorm > 92      6grp_total > 99      4grp_total > 62      6grp_highest_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 222.6
(-0.5)
P 		217.9
(-1.2)
P 		244.1
(3)
P 		207.1
(-3)
P 		37
B 190.3
(-3)
P 		203.9
(-0.5)
P 		201.3
(-1)
P 		222.7
(3)
P 		32
C 237.3
(3)
P 		197.8
(-0.2)
P 		209.3
(0.7)
P 		163
(-3)
P 		74
avr 216.7
(2.6) 		206.5
(-0.4) 		218.2
(3) 		197.6
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 347
1 2 3 4 5 6 range
A 255.5
(-1.3)
P 		230.7
(-1.8)
P 		179.5
(-3)
P 		202.9
(-2.5)
P 		409.2
(2.2)
P 		442.2
(3)
P 		263
B 157.8
(-2.6)
P 		188
(-1.9)
P 		136.2
(-3)
P 		236.7
(-1)
P 		342.8
(1.2)
P 		431.5
(3)
P 		295
C 225.9
(-1.7)
P 		226.4
(-1.7)
P 		227.7
(-1.7)
P 		158.1
(-3)
P 		483.3
(3)
P 		378.1
(1.1)
P 		325
avr 213.1
(-2.2) 		215
(-2.1) 		181.1
(-3) 		199.2
(-2.5) 		411.8
(2.9) 		417.3
(3) 		236
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 81.1
(3)
P 		47.3
(-1)
P 		63.8
(1)
P 		30.3
(-3)
P 		51
B 60.7
(3)
P 		50.4
(-1.4)
P 		46.7
(-3)
P 		47.5
(-2.7)
P 		14
C 78.5
(3)
P 		56.9
(0.5)
P 		73
(2.4)
P 		27.5
(-3)
P 		51
avr 73.4
(3) 		51.5
(-0.4) 		61.2
(1.1) 		35.1
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 47.1
(-2.4)
P 		82.1
(0.1)
P 		39.1
(-3)
P 		51.5
(-2.1)
P 		123.5
(3)
P 		107.6
(1.9)
P 		84
B 54.9
(-2)
P 		62.6
(-1.6)
P 		33.1
(-3)
P 		62.7
(-1.6)
P 		139.3
(2)
P 		160.9
(3)
P 		128
C 83.7
(-0.5)
P 		69.1
(-1.2)
P 		57.9
(-1.7)
P 		31.8
(-3)
P 		156.4
(3)
P 		126.6
(1.6)
P 		125
avr 61.9
(-1.8) 		71.3
(-1.3) 		43.4
(-3) 		48.7
(-2.7) 		139.7
(3) 		131.7
(2.5) 		96
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175296_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20749
Sequence Type Exemplar sequence
Representative Public ID AU115194 NCBI
Target Description AU115194_rc /REP_DB=TREMBL Accession /GB=AU115194 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk729a1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061282(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061282 NCBI Caenorhabditis elegans F48A11.4 (F48A11.4) mRNA, complete cds. 11/11 A 
F48A11.4 ENSEMBL cdna:known chromosome:CEL140:II:213191:216620:-1 gene:F48A11.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000036190 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:213226-213493(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F48A11.4
Entrez Gene 185962 Entrez gene
SwissProt O17369 EMBL-EBI
WormBase CE32668 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71286 Hypothetical protein F48A11.4 [Caenorhabditis elegans] ref|NP_493683.2| F48A11.4 [Caenorhabditis elegans] 0.0
blast CAE73857 Hypothetical protein CBG21441 [Caenorhabditis briggsae] 1.0E-104
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493683.2 1 359-381
F48A11.4 1 359-381
Sequence
Target Sequence 
>C. ELEGANS:175296_AT
acacttcacaacacagaattggttgatctttggttcttatcttatttattttttatattt
tgggaatcttttttttttttaatttttgcaatttcttattctcgttgaaaatgtatttat
atatatcttctcacccacaatttctctcaattcattcacttttttggtcgtttttgttag
tttttagcccagtttttcactgaaatcccgcgttttctaacacaaattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACTTCACAACACAGAATTGGTTG 197 109 13 Antisense
GAATTGGTTGATCTTTGGTTCTTAT 498 323 28 Antisense
ATCTTTGGTTCTTATCTTATTTATT 600 31 38 Antisense
TTTGCAATTTCTTATTCTCGTTGAA 3 669 97 Antisense
TTATATATATCTTCTCACCCACAAT 601 679 129 Antisense
CACCCACAATTTCTCTCAATTCATT 103 201 144 Antisense
ATTTCTCTCAATTCATTCACTTTTT 240 17 152 Antisense
TCATTCACTTTTTTGGTCGTTTTTG 247 617 164 Antisense
TAGTTTTTAGCCCAGTTTTTCACTG 613 653 190 Antisense
TTTTCACTGAAATCCCGCGTTTTCT 253 675 206 Antisense
ATCCCGCGTTTTCTAACACAAATTG 433 35 217 Antisense
Sequence Source Affymetrix Proprietary Database