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[175295_at]

Description AV183615_rc /REP_DB=TREMBL Accession /GB=AV183615 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk653h6 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 57      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_total > 58      4grp_total > 01      6grp_cgc > 37      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 54.3
(-3)
P 		73.3
(-1.8)
P 		81.4
(-1.3)
P 		148.3
(3)
P 		94
B 75.3
(-0.7)
P 		40.3
(-3)
P 		54.8
(-2)
P 		131.1
(3)
P 		91
C 76
(-2.1)
P 		55.3
(-3)
P 		63.6
(-2.6)
P 		193.3
(3)
P 		138
avr 68.5
(-2.3) 		56.3
(-3) 		66.6
(-2.4) 		157.6
(3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 71.2
(0.1)
P 		29.9
(-3)
A 		56.7
(-1)
P 		64.2
(-0.4)
P 		35.6
(-2.6)
A 		108.6
(3)
P 		79
B 99.5
(3)
P 		76.5
(0.5)
P 		43.2
(-3)
P 		68.9
(-0.3)
P 		46.3
(-2.7)
P 		83.9
(1.3)
P 		56
C 68.5
(0.1)
P 		36
(-3)
P 		62.6
(-0.5)
A 		62.4
(-0.5)
P 		53.5
(-1.3)
P 		98.8
(3)
P 		63
avr 79.7
(1) 		47.5
(-2.7) 		54.2
(-2) 		65.2
(-0.7) 		45.1
(-3) 		97.1
(3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 19.8
(1)
P 		15.9
(-3)
P 		21.3
(2.6)
P 		21.7
(3)
P 		6
B 24
(1.7)
P 		10
(-3)
P 		12.7
(-2.1)
P 		27.9
(3)
P 		18
C 25.2
(0.3)
P 		15.9
(-3)
P 		22.2
(-0.7)
P 		32.6
(3)
P 		17
avr 23
(1) 		13.9
(-3) 		18.7
(-0.9) 		27.4
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 13.1
(-2.1)
P 		10.6
(-3)
A 		12.3
(-2.4)
P 		16.3
(-0.8)
P 		10.8
(-2.9)
A 		26.4
(3)
P 		16
B 34.6
(3)
P 		25.5
(0.7)
P 		10.5
(-3)
P 		18.2
(-1.1)
P 		18.8
(-0.9)
P 		31.3
(2.2)
P 		24
C 25.4
(0.9)
P 		11
(-3)
P 		15.9
(-1.7)
A 		12.6
(-2.6)
P 		17.3
(-1.3)
P 		33.1
(3)
P 		22
avr 24.4
(1) 		15.7
(-2) 		12.9
(-3) 		15.7
(-2) 		15.6
(-2.1) 		30.3
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175295_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20748
Sequence Type Exemplar sequence
Representative Public ID AV183615 NCBI
Target Description AV183615_rc /REP_DB=TREMBL Accession /GB=AV183615 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk653h6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062577(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062577 NCBI Caenorhabditis elegans DiSHevelled related family member (dsh-1) (dsh-1) mRNA, complete cds. 11/11 A 
SNAP00000021335 ENSEMBL cdna:SNAP chromosome:CEL140:II:5214502:5215094:-1 10/11 None
GENEFINDER00000021352 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5214502:5215005:-1 9/11 None
C34F11.9c ENSEMBL cdna:known chromosome:CEL140:II:5214420:5225345:-1 gene:C34F11.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173894 3 1 NM_062577 175295_at (11)
NM_062578 174672_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5214427-5215691(-) 100.0 100.0
Public Domain and Genome References
Ensembl C34F11.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM98049 Dishevelled related protein 1, isoform c [Caenorhabditis elegans] ref|NP_494978.2| DiSHevelled related family member (dsh-1) [Caenorhabditis elegans] 0.0
blast AAM98047 Dishevelled related protein 1, isoform a [Caenorhabditis elegans] ref|NP_494979.3| DiSHevelled related family member (dsh-1) [Caenorhabditis elegans] 0.0
blast AAM98048 Dishevelled related protein 1, isoform b [Caenorhabditis elegans] ref|NP_494980.2| DiSHevelled related family member (dsh-1) [Caenorhabditis elegans] 1.0E-149
blast AAM98049 Dishevelled related protein 1, isoform c [Caenorhabditis elegans] ref|NP_494978.2| DiSHevelled related family member (dsh-1) [Caenorhabditis elegans] 2.0E-31
blast AAM98049 Dishevelled related protein 1, isoform c [Caenorhabditis elegans] ref|NP_494978.2| DiSHevelled related family member (dsh-1) [Caenorhabditis elegans] 4.0E-28
blast CAE59066 Hypothetical protein CBG02351 [Caenorhabditis briggsae] 6.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 1.6E-25
Pfam IPR000591 EMBL-EBI Pleckstrin putative G-protein interacting domain 2.4E-21
Pfam IPR001158 EMBL-EBI DIX domain 3.9E-41
Pfam IPR003351 EMBL-EBI Dishevelled protein 1.6E-21
Sequence
Target Sequence 
>C. ELEGANS:175295_AT
ggatatgcatcaatgccggcttcaccattcccaccagctcaattgcagcaacagagaaga
gaaggaagtacaaccagtggaagtagtggcggtggaattagaaaacaacgagttgttgtt
cttcccagaaaaccatcatcgtctgcaaatgttccatttgatgatagttctacaatctat
gaagaatcaaataattcatttcttatggcaactggacaaagatacgagtattaactgtta
atattaattcaatgttttggtgcttactttttgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATATGCATCAATGCCGGCTTCAC 675 509 69 Antisense
TTCCCACCAGCTCAATTGCAGCAAC 114 697 96 Antisense
AGTACAACCAGTGGAAGTAGTGGCG 186 1 135 Antisense
GTAGTGGCGGTGGAATTAGAAAACA 502 433 151 Antisense
GTTGTTGTTCTTCCCAGAAAACCAT 604 435 180 Antisense
TTCTTCCCAGAAAACCATCATCGTC 145 691 187 Antisense
AACCATCATCGTCTGCAAATGTTCC 423 147 199 Antisense
ATCATCGTCTGCAAATGTTCCATTT 675 29 203 Antisense
ATAATTCATTTCTTATGGCAACTGG 437 25 259 Antisense
TATGGCAACTGGACAAAGATACGAG 226 655 272 Antisense
AATGTTTTGGTGCTTACTTTTTGAG 581 161 319 Antisense
Sequence Source Affymetrix Proprietary Database