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[175294_s_at]

Description AV179538_rc /REP_DB=TREMBL Accession /GB=AV179538 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk594d9 : 3prime end, single read.
Cluster 6grp_total > 93      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 772
1 2 3 4 range
A 24.4
(-3)
A 		550.6
(2.6)
P 		592.1
(3)
P 		33.6
(-2.9)
A 		568
B 59
(-2.6)
A 		761.6
(2.9)
P 		778.9
(3)
P 		6.8
(-3)
A 		772
C 60.9
(-2.9)
A 		641.5
(2.1)
P 		747.8
(3)
P 		47.2
(-3)
A 		701
avr 48.1
(-2.8) 		651.2
(2.5) 		706.3
(3) 		29.2
(-3) 		677

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 893
1 2 3 4 5 6 range
A 154.2
(-3)
A 		464.5
(-0.3)
P 		346.9
(-1.3)
P 		572.4
(0.7)
P 		837
(3)
P 		325.3
(-1.5)
P 		683
B 212.8
(-3)
A 		450.4
(-1)
P 		353.6
(-1.8)
P 		543
(-0.2)
P 		933
(3)
P 		579.9
(0.1)
P 		720
C 146.7
(-3)
A 		540
(-0.4)
P 		291.6
(-2)
P 		656.5
(0.4)
P 		1039.5
(3)
P 		528.4
(-0.4)
P 		893
avr 171.2
(-3) 		485
(-0.5) 		330.7
(-1.7) 		590.6
(0.3) 		936.5
(3) 		477.9
(-0.6) 		765
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 259
1 2 3 4 range
A 8.9
(-2.8)
A 		119.5
(1.6)
P 		154.8
(3)
P 		4.9
(-3)
A 		150
B 18.8
(-2.4)
A 		188.1
(3)
P 		180.5
(2.8)
P 		1.5
(-3)
A 		187
C 20.2
(-2.7)
A 		184.4
(1.2)
P 		260.6
(3)
P 		8
(-3)
A 		253
avr 16
(-2.7) 		164
(1.9) 		198.6
(3) 		4.8
(-3) 		194

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 351
1 2 3 4 5 6 range
A 28.4
(-3)
A 		165.2
(0.7)
P 		75.5
(-1.7)
P 		145.2
(0.1)
P 		252.6
(3)
P 		79.2
(-1.6)
P 		224
B 74
(-3)
A 		149.9
(-1.5)
P 		85.9
(-2.8)
P 		143.8
(-1.6)
P 		379.1
(3)
P 		216.2
(-0.2)
P 		305
C 54.4
(-3)
A 		164.8
(-0.7)
P 		74.2
(-2.6)
P 		132
(-1.3)
P 		336.4
(3)
P 		176.9
(-0.4)
P 		282
avr 52.3
(-3) 		160
(-0.6) 		78.5
(-2.4) 		140.3
(-1) 		322.7
(3) 		157.4
(-0.7) 		270
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175294_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21238
Sequence Type Exemplar sequence
Representative Public ID AV179538 NCBI
Target Description AV179538_rc /REP_DB=TREMBL Accession /GB=AV179538 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk594d9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064850(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064850 NCBI Caenorhabditis elegans T17H7.7 (T17H7.7) mRNA, complete cds. 11/11 A 
T17H7.7 ENSEMBL cdna:known chromosome:CEL140:III:755373:758069:-1 gene:T17H7.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:755439-755850(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T17H7.7
Entrez Gene 175229 Entrez gene
SwissProt Q22539 EMBL-EBI
WormBase CE32725 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48172 Hypothetical protein T17H7.7 [Caenorhabditis elegans] ref|NP_497251.2| T17H7.7 [Caenorhabditis elegans] 0.0
blast CAE69198 Hypothetical protein CBG15238 [Caenorhabditis briggsae] 1.0E-123
Sequence
Target Sequence 
>C. ELEGANS:175294_S_AT
aaactaccacgagcgtacagatttcgaacgtctggcttccgattaccgtcgtcgtcttga
aaataccggcgatattaacaaaattcttcagaagatttcagaaaatgcttatatctcatt
ggttgaacgtggtggtcgtcgaaggctgtttggaagcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACTACCACGAGCGTACAGATTTC 508 123 15 Antisense
CACGAGCGTACAGATTTCGAACGTC 512 181 22 Antisense
AGATTTCGAACGTCTGGCTTCCGAT 331 65 33 Antisense
TTTCGAACGTCTGGCTTCCGATTAC 53 669 36 Antisense
GATTACCGTCGTCGTCTTGAAAATA 64 427 55 Antisense
CGTCGTCGTCTTGAAAATACCGGCG 513 243 61 Antisense
ATACCGGCGATATTAACAAAATTCT 265 23 77 Antisense
ATTTCAGAAAATGCTTATATCTCAT 50 17 109 Antisense
GGTTGAACGTGGTGGTCGTCGAAGG 484 1 135 Antisense
GGTGGTCGTCGAAGGCTGTTTGGAA 40 497 145 Antisense
GTCGTCGAAGGCTGTTTGGAAGCTA 634 471 149 Antisense
Sequence Source Affymetrix Proprietary Database