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[175293_at]

Description AU115216_rc /REP_DB=TREMBL Accession /GB=AU115216 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk729c6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 99      4grp_highest_8_8 > 13      4grp_high_8_8 > 31      6grp_highest_nonorm > 88      6grp_total > 99      4grp_total > 24      6grp_cgc > 79      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1150
1 2 3 4 range
A 990.5
(-2.5)
P 		1573.5
(0.9)
P 		1928
(3)
P 		901.5
(-3)
P 		1027
B 1359.2
(-0.9)
P 		1181.8
(-2)
P 		1021.2
(-3)
P 		1974.5
(3)
P 		953
C 824.8
(-3)
P 		1081.6
(-1.6)
P 		1456.9
(0.6)
P 		1888.3
(3)
P 		1064
avr 1058.2
(-3) 		1279
(-0.5) 		1468.7
(1.6) 		1588.1
(3) 		530

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1512
1 2 3 4 5 6 range
A 733.5
(-3)
P 		956.4
(-2.1)
P 		769
(-2.9)
P 		914.9
(-2.3)
P 		2217.6
(2.9)
P 		2245.7
(3)
P 		1512
B 1003.9
(-1.7)
P 		826.7
(-3)
P 		865.3
(-2.7)
P 		1200.2
(-0.3)
P 		1645.9
(3)
P 		1451
(1.6)
P 		819
C 1134.4
(-2.8)
P 		1201.3
(-2.4)
P 		1093.5
(-3)
P 		1201.5
(-2.4)
P 		2162.8
(3)
P 		1657.6
(0.2)
P 		1069
avr 957.3
(-2.7) 		994.8
(-2.5) 		909.3
(-3) 		1105.5
(-1.9) 		2008.8
(3) 		1784.8
(1.8) 		1100
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 376
1 2 3 4 range
A 360.6
(0.7)
P 		341.6
(0.4)
P 		504
(3)
P 		132
(-3)
P 		372
B 433.5
(3)
P 		291.9
(-1.3)
P 		236.6
(-3)
P 		420.8
(2.6)
P 		197
C 273
(-3)
P 		311
(-2)
P 		507.8
(3)
P 		318.4
(-1.8)
P 		235
avr 355.7
(0.1) 		314.8
(-1.8) 		416.1
(3) 		290.4
(-3) 		126

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 565
1 2 3 4 5 6 range
A 135.2
(-3)
P 		340.1
(-0.7)
P 		167.5
(-2.6)
P 		232.1
(-1.9)
P 		669.2
(3)
P 		546.7
(1.6)
P 		534
B 349.3
(-1.2)
P 		275.2
(-2.1)
P 		210.1
(-3)
P 		317.9
(-1.6)
P 		668.7
(3)
P 		541.1
(1.3)
P 		459
C 420.5
(-0.7)
P 		366.6
(-1.4)
P 		278.3
(-2.5)
P 		241.6
(-3)
P 		699.9
(3)
P 		554.9
(1.1)
P 		458
avr 301.7
(-1.9) 		327.3
(-1.6) 		218.6
(-3) 		263.9
(-2.4) 		679.3
(3) 		547.6
(1.3) 		461
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175293_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20167
Sequence Type Exemplar sequence
Representative Public ID AU115216 NCBI
Target Description AU115216_rc /REP_DB=TREMBL Accession /GB=AU115216 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk729c6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060853(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060853 NCBI Caenorhabditis elegans Cytokinesis, Apoptosis, RNA-associated family member (car-1) (car-1) mRNA, complete cds. 11/11 None
Y18D10A.17.2 ENSEMBL cdna:known chromosome:CEL140:I:12912584:12914349:1 gene:Y18D10A.17 11/11 None
Y18D10A.17.1 ENSEMBL cdna:known chromosome:CEL140:I:12912591:12914349:1 gene:Y18D10A.17 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12913724-12914207(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol car-1
Ensembl Y18D10A.17
Entrez Gene 173158 Entrez gene
SwissProt Q9XW17 EMBL-EBI
WormBase CE21413 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22317 Hypothetical protein Y18D10A.17 [Caenorhabditis elegans] ref|NP_493254.1| Cytokinesis, Apoptosis, RNA-associated family member (car-1) [Caenorhabditis elegans] 1.0E-144
blast CAE63508 Hypothetical protein CBG07987 [Caenorhabditis briggsae] 1.0E-131
blast AAH45423 Hypothetical protein MGC55673 [Danio rerio] ref|NP_956465.1| hypothetical protein LOC393140 [Danio rerio] 3.0E-38
Sequence
Target Sequence 
>C. ELEGANS:175293_AT
tatgtaagtttatccattctccccccccccccatcaatgattacccttgtctcttctcaa
ctattggcgtgttataagaaacccgttaattatttagaaatctcgtacgattcaatgcgg
gccttctgttattttgtaataattattgcgcacccacccaccgacacacatctcccatcc
aaaaaattcccaatgttttttcttcccccactacaatagtgattggacccttcccccgtt
tttttaagttctagcttgtgaattttaaagcatgtcgttctgttgtcctcagtttgtcat
tttaataaaattgcagtgactaaactgtcaaatcgtttgcacctgctctcctatcatccc
acaccccgccttttatgattgtcttctaggagatatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGTAAGTTTATCCATTCTCCCCC 193 655 57 Antisense
CCCCATCAATGATTACCCTTGTCTC 16 261 85 Antisense
GGGCCTTCTGTTATTTTGTAATAAT 576 491 175 Antisense
TGTAATAATTATTGCGCACCCACCC 392 559 191 Antisense
ACACATCTCCCATCCAAAAAATTCC 437 109 222 Antisense
ATCTCCCATCCAAAAAATTCCCAAT 687 31 226 Antisense
TTTTCTTCCCCCACTACAATAGTGA 515 673 254 Antisense
TAAAGCATGTCGTTCTGTTGTCCTC 464 641 322 Antisense
GTTCTGTTGTCCTCAGTTTGTCATT 462 441 333 Antisense
ACTGTCAAATCGTTTGCACCTGCTC 588 97 380 Antisense
TTATGATTGTCTTCTAGGAGATATG 562 679 429 Antisense
Sequence Source Affymetrix Proprietary Database