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[175290_at]

Description AU116220_rc /REP_DB=TREMBL Accession /GB=AU116220 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk742b1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 73      6grp_high1_10_10 > 37      4grp_highest_8_8 > 45      4grp_high_8_8 > 01      6grp_highest_nonorm > 80      6grp_total > 08      4grp_total > 14      6grp_highest_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 480
1 2 3 4 range
A 515.6
(3)
P 		204.8
(-2.3)
P 		166.1
(-3)
P 		385.3
(0.8)
P 		350
B 411.4
(0.5)
P 		161.5
(-3)
P 		181.3
(-2.7)
P 		586.9
(3)
P 		425
C 467.8
(3)
P 		106.5
(-3)
P 		179.9
(-1.8)
P 		467.1
(3)
P 		361
avr 464.9
(2.7) 		157.6
(-3) 		175.8
(-2.7) 		479.8
(3) 		322

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 263
1 2 3 4 5 6 range
A 360.1
(3)
P 		176.5
(-1.2)
P 		228.9
(0)
P 		146.1
(-1.9)
P 		96.7
(-3)
P 		245.7
(0.4)
P 		263
B 227.5
(1.4)
P 		129.1
(-3)
P 		146.5
(-2.2)
P 		152.7
(-2)
P 		137.2
(-2.6)
P 		264.5
(3)
P 		135
C 345.4
(3)
P 		169.5
(-1.6)
P 		217.8
(-0.4)
P 		194.6
(-1)
P 		117.7
(-3)
P 		231.2
(-0)
P 		228
avr 311
(3) 		158.4
(-1.7) 		197.7
(-0.5) 		164.5
(-1.5) 		117.2
(-3) 		247.1
(1) 		194
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 187.7
(3)
P 		44.5
(-3)
P 		43.4
(-3)
P 		56.4
(-2.5)
P 		144
B 131.2
(3)
P 		39.9
(-3)
P 		42
(-2.9)
P 		125.1
(2.6)
P 		91
C 154.9
(3)
P 		30.6
(-3)
P 		62.7
(-1.5)
P 		78.8
(-0.7)
P 		124
avr 157.9
(3) 		38.3
(-3) 		49.4
(-2.4) 		86.8
(-0.6) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 66.4
(3)
P 		62.8
(2.4)
P 		49.9
(0.3)
P 		37.1
(-1.7)
P 		29.2
(-3)
P 		59.8
(1.9)
P 		37
B 79.2
(1.2)
P 		43
(-2.3)
P 		35.6
(-3)
P 		40.4
(-2.5)
P 		55.7
(-1.1)
P 		98.6
(3)
P 		63
C 128
(3)
P 		51.7
(-2.1)
P 		55.4
(-1.8)
P 		39.1
(-2.9)
P 		38.1
(-3)
P 		77.4
(-0.4)
P 		90
avr 91.2
(3) 		52.5
(-1.4) 		47
(-2.1) 		38.9
(-3) 		41
(-2.8) 		78.6
(1.6) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175290_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21067
Sequence Type Exemplar sequence
Representative Public ID AU116220 NCBI
Target Description AU116220_rc /REP_DB=TREMBL Accession /GB=AU116220 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk742b1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AU116220
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AU116220 AU116220_rc /REP_DB=TREMBL Accession /GB=AU116220 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk742b1 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5627870-5628148(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175290_AT
agttcagctagccctgagacaatattttgcgccaaagctgaacaaatttccggtggaagt
caatcggaaattaagaaaaatatggagaacttcccattactttagctatactcctcccaa
cctttccccgtgtaccctcaacctgaaagaatccacctctgtaaaagcctgcagttgtca
taaaccttgttcccaatttctcttccctttcctaattttctccgaaaaaaatgcacgtgg
acctctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTCAGCTAGCCCTGAGACAATAT 449 61 13 Antisense
GCCCTGAGACAATATTTTGCGCCAA 327 285 23 Antisense
GCGCCAAAGCTGAACAAATTTCCGG 657 287 41 Antisense
GGAGAACTTCCCATTACTTTAGCTA 508 515 96 Antisense
CCCATTACTTTAGCTATACTCCTCC 103 259 105 Antisense
CCGTGTACCCTCAACCTGAAAGAAT 105 265 140 Antisense
CCCTCAACCTGAAAGAATCCACCTC 7 261 147 Antisense
AATCCACCTCTGTAAAAGCCTGCAG 235 167 162 Antisense
AAGCCTGCAGTTGTCATAAACCTTG 122 149 177 Antisense
CATAAACCTTGTTCCCAATTTCTCT 26 213 191 Antisense
GAAAAAAATGCACGTGGACCTCTCC 87 355 236 Antisense
Sequence Source Affymetrix Proprietary Database