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[175289_at]

Description AU113369_rc /REP_DB=TREMBL Accession /GB=AU113369 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk706f4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 12      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 56      6grp_total > 24      4grp_total > 05      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5036
1 2 3 4 range
A 2912.4
(-0.7)
P 		1206.1
(-3)
P 		1320.3
(-2.8)
P 		5678.1
(3)
P 		4472
B 2820.9
(-0.9)
P 		1385
(-2.9)
P 		1315.4
(-3)
P 		5668.4
(3)
P 		4353
C 2763.4
(-1.3)
P 		1434.7
(-2.9)
P 		1337.5
(-3)
P 		6241.6
(3)
P 		4904
avr 2832.2
(-1) 		1341.9
(-3) 		1324.4
(-3) 		5862.7
(3) 		4538

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1369
1 2 3 4 5 6 range
A 2671.3
(2.1)
P 		2201.7
(0)
P 		2878.2
(3)
P 		2102.5
(-0.4)
P 		2021.1
(-0.8)
P 		1509.2
(-3)
P 		1369
B 2654.9
(3)
P 		2273.3
(-0.3)
P 		2330.2
(0.2)
P 		2370.9
(0.5)
P 		1988.4
(-2.8)
P 		1962.5
(-3)
P 		692
C 2232.4
(0.3)
P 		2510.8
(3)
P 		1927.5
(-2.6)
P 		1948.3
(-2.4)
P 		1882
(-3)
P 		2206.6
(0.1)
P 		629
avr 2519.5
(3) 		2328.6
(1.2) 		2378.6
(1.7) 		2140.6
(-0.6) 		1963.8
(-2.3) 		1892.8
(-3) 		627
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 946
1 2 3 4 range
A 1060.4
(3)
P 		261.8
(-3)
P 		345.2
(-2.4)
P 		831.2
(1.3)
P 		799
B 899.6
(1)
P 		342.1
(-2.8)
P 		304.8
(-3)
P 		1207.9
(3)
P 		903
C 914.8
(1.7)
P 		412.5
(-3)
P 		466.2
(-2.5)
P 		1052.4
(3)
P 		640
avr 958.3
(2.4) 		338.8
(-3) 		372.1
(-2.7) 		1030.5
(3) 		692

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 556
1 2 3 4 5 6 range
A 492.4
(-1.2)
P 		783
(3)
P 		626.8
(0.7)
P 		533.2
(-0.6)
P 		609.9
(0.5)
P 		367.4
(-3)
P 		416
B 923.8
(3)
P 		756.7
(0.2)
P 		565.8
(-3)
P 		628
(-2)
P 		807.9
(1.1)
P 		731.8
(-0.2)
P 		358
C 827.4
(3)
P 		766.1
(2.2)
P 		490.6
(-1.6)
P 		391.8
(-3)
P 		609
(-0)
P 		738.7
(1.8)
P 		436
avr 747.9
(2.5) 		768.6
(3) 		561.1
(-2) 		517.7
(-3) 		675.6
(0.8) 		612.6
(-0.7) 		251
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175289_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20385
Sequence Type Exemplar sequence
Representative Public ID AU113369 NCBI
Target Description AU113369_rc /REP_DB=TREMBL Accession /GB=AU113369 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk706f4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059943(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059943 NCBI Caenorhabditis elegans F39H2.1 (F39H2.1) mRNA, complete cds. 11/11 None
F39H2.1.2 ENSEMBL cdna:known chromosome:CEL140:I:8666999:8668056:1 gene:F39H2.1 11/11 None
F39H2.1.1 ENSEMBL cdna:known chromosome:CEL140:I:8667024:8668093:1 gene:F39H2.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006544 6/11 Cross Hyb Matching Probes None
GENEFINDER00000006551 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8667344-8667945(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F39H2.1
Entrez Gene 172665 Entrez gene
SwissProt Q93702 EMBL-EBI
WormBase CE30530 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7218 neuropeptide signaling pathway inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03086 Hypothetical protein F39H2.1 [Caenorhabditis elegans] ref|NP_492344.2| F39H2.1 [Caenorhabditis elegans] 5.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.37
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.37
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.37
Sequence
Target Sequence 
>C. ELEGANS:175289_AT
gtccccgtcagccaaatggatgcgattcggtaaaagatcaccatcagccaagtggatgag
attcggaaaacgatctccatcagcaaaatggatgagatttggaaagcgtagtggagctga
agcagtttctgaacaggattattaatttattgtttatattttgtttacttctatcacctt
tttttcccatcgacctagaaatctgacccatcttcttctcgttaatcactcgactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCCCGTCAGCCAAATGGATGCGA 48 475 27 Antisense
GGATGCGATTCGGTAAAAGATCACC 490 513 44 Antisense
AAAGATCACCATCAGCCAAGTGGAT 425 123 59 Antisense
TTCGGAAAACGATCTCCATCAGCAA 351 695 88 Antisense
GAAAGCGTAGTGGAGCTGAAGCAGT 95 359 128 Antisense
GGAGCTGAAGCAGTTTCTGAACAGG 205 521 139 Antisense
TATTTTGTTTACTTCTATCACCTTT 303 663 183 Antisense
TTTTTTCCCATCGACCTAGAAATCT 707 675 206 Antisense
CTAGAAATCTGACCCATCTTCTTCT 342 225 221 Antisense
CCATCTTCTTCTCGTTAATCACTCG 553 269 234 Antisense
CTTCTTCTCGTTAATCACTCGACTT 198 221 238 Antisense
Sequence Source Affymetrix Proprietary Database