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[175287_at]

Description AV183453_rc /REP_DB=TREMBL Accession /GB=AV183453 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk651h1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      4grp_highest_8_8 > 16      4grp_high_8_8 > 60      6grp_highest_nonorm > 65      6grp_total > 93      4grp_total > 59      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 447
1 2 3 4 range
A 787.5
(-0.9)
P 		1046.1
(2.6)
P 		1075.6
(3)
P 		628.2
(-3)
P 		447
B 1005.1
(3)
P 		794.7
(-1.3)
P 		731.9
(-2.6)
P 		710
(-3)
P 		295
C 727.4
(-3)
P 		813.7
(0.4)
P 		880.8
(3)
P 		776.9
(-1.1)
P 		153
avr 840
(1.2) 		884.8
(2.6) 		896.1
(3) 		705
(-3) 		191

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1665
1 2 3 4 5 6 range
A 976.9
(-0.7)
P 		1017.5
(-0.4)
P 		634.1
(-3)
P 		1197.2
(0.8)
P 		1515.4
(3)
P 		1328.9
(1.7)
P 		881
B 739.8
(-2.3)
P 		2031.2
(3)
P 		558.2
(-3)
P 		852
(-1.8)
P 		1586.9
(1.2)
P 		1054.3
(-1)
P 		1473
C 1370.9
(-0.4)
P 		1151.1
(-1.3)
P 		1336.4
(-0.5)
P 		1185.4
(-1.1)
P 		2223.6
(3)
P 		709.7
(-3)
P 		1514
avr 1029.2
(-1.8) 		1399.9
(0.6) 		842.9
(-3) 		1078.2
(-1.5) 		1775.3
(3) 		1031
(-1.8) 		932
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 229
1 2 3 4 range
A 286.7
(3)
P 		227.1
(1.2)
P 		281.2
(2.8)
P 		92
(-3)
P 		195
B 320.5
(3)
P 		196.3
(-1.4)
P 		169.6
(-2.4)
P 		151.3
(-3)
P 		169
C 240.8
(0.7)
P 		233.9
(0.5)
P 		307
(3)
P 		131
(-3)
P 		176
avr 282.7
(3) 		219.1
(0.6) 		252.6
(1.9) 		124.8
(-3) 		158

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 584
1 2 3 4 5 6 range
A 180.1
(-2.2)
P 		361.9
(1.2)
P 		138.1
(-3)
P 		303.6
(0.1)
P 		457.3
(3)
P 		323.6
(0.5)
P 		319
B 257.4
(-1.6)
P 		676.1
(3)
P 		135.6
(-3)
P 		225.7
(-2)
P 		644.7
(2.7)
P 		393.1
(-0.1)
P 		541
C 508.1
(0.4)
P 		351.2
(-1.6)
P 		340.1
(-1.7)
P 		238.4
(-3)
P 		719.5
(3)
P 		237.6
(-3)
P 		482
avr 315.2
(-1.4) 		463.1
(0.9) 		204.6
(-3) 		255.9
(-2.2) 		607.2
(3) 		318.1
(-1.3) 		403
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175287_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20552
Sequence Type Exemplar sequence
Representative Public ID AV183453 NCBI
Target Description AV183453_rc /REP_DB=TREMBL Accession /GB=AV183453 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk651h1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y38F1A.10 ENSEMBL cdna:known chromosome:CEL140:II:13014295:13020428:-1 gene:Y38F1A.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13014301-13014581(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y38F1A.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21637 Hypothetical protein Y38F1A.10 [Caenorhabditis elegans] ref|NP_496769.2| Y38F1A.10 [Caenorhabditis elegans] 0.0
blast CAE59430 Hypothetical protein CBG02802 [Caenorhabditis briggsae] 0.0
blast AAN13373 CG10295-PC, isoform C [Drosophila melanogaster] gb|AAF54132.1| CG10295-PB, isoform B [Drosophila melanogaster] gb|AAF54131.1| CG10295-PA, isoform A [Drosophila melanogaster] gb|AAQ23609.1| LD20767p [Drosophila melanogaster] ref|NP_731074.1| CG10295-PC, isoform C [Drosophila melanogaster] ref|NP_731073.1| CG10295-PA, isoform A [Drosophila melanogaster] ref|NP_524681.1| CG10295-PB, isoform B [Drosophila melanogaster] 1.0E-101
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 9.0E-61
hanks 2.1.17 CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; TWITCH 2.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 9.7E-78
Sequence
Target Sequence 
>C. ELEGANS:175287_AT
atgttttaccatacacaagcccttatatcttgctcctcgttttttttgtagtttttttct
ctctaaaaatctctcccattcacactattttattgtatgcaaaaaaaaaccttcctgtga
attaagcgcgaaaactgtggcgaaaacattattattatttttatcacctattgtcatttt
tgttttgtttctccccttctctccatcccccaacaactacctgccagcatcgtacttttt
tgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTTTACCATACACAAGCCCTTA 305 45 17 Antisense
ACACAAGCCCTTATATCTTGCTCCT 42 111 29 Antisense
TTTTCTCTCTAAAAATCTCTCCCAT 325 677 71 Antisense
CTCTCCCATTCACACTATTTTATTG 564 231 87 Antisense
ATTCACACTATTTTATTGTATGCAA 625 11 94 Antisense
GTATGCAAAAAAAAACCTTCCTGTG 166 453 111 Antisense
AACCTTCCTGTGAATTAAGCGCGAA 329 145 124 Antisense
TAAGCGCGAAAACTGTGGCGAAAAC 529 635 139 Antisense
TATTATTTTTATCACCTATTGTCAT 114 663 169 Antisense
TTTATCACCTATTGTCATTTTTGTT 71 675 176 Antisense
CCTGCCAGCATCGTACTTTTTTGCT 373 267 236 Antisense
Sequence Source Affymetrix Proprietary Database