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[175286_at]

Description AV184387_rc /REP_DB=TREMBL Accession /GB=AV184387 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk663g9 : 3prime end, single read.
Cluster 6grp_total > 77      4grp_total > 27      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 2
(-3)
A 		41.7
(1.1)
A 		23.6
(-0.8)
A 		60.4
(3)
M 		58
B 29.4
(0.4)
A 		40.1
(3)
A 		15
(-3)
A 		31.6
(1)
A 		25
C 38.7
(0.8)
A 		29.6
(-0.2)
A 		6.1
(-3)
A 		57.2
(3)
A 		51
avr 23.4
(-1.5) 		37.1
(0.8) 		14.9
(-3) 		49.7
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 13.7
(-2.1)
A 		14.8
(-2)
A 		25
(-1.1)
A 		4.6
(-3)
A 		42
(0.6)
P 		67.8
(3)
P 		63
B 1.8
(-3)
A 		8.6
(-2.7)
A 		22.6
(-1.9)
A 		28.5
(-1.6)
A 		44.5
(-0.8)
P 		118.9
(3)
P 		117
C 1.7
(-3)
A 		26.6
(-2)
P 		8.8
(-2.7)
A 		19.5
(-2.3)
A 		30.6
(-1.9)
A 		157.1
(3)
P 		155
avr 5.7
(-3) 		16.7
(-2.4) 		18.8
(-2.3) 		17.5
(-2.3) 		39
(-1.2) 		114.6
(3) 		109
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 0.7
(-3)
A 		9.1
(3)
A 		6.2
(0.9)
A 		8.8
(2.8)
M 		8
B 9.4
(2.5)
A 		9.9
(3)
A 		3.5
(-3)
A 		6.7
(0)
A 		6
C 12.8
(3)
A 		8.5
(0.6)
A 		2.1
(-3)
A 		9.6
(1.2)
A 		11
avr 7.6
(1.2) 		9.2
(3) 		3.9
(-3) 		8.4
(2.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 2.5
(-2.5)
A 		5.3
(-1.4)
A 		5.5
(-1.3)
A 		1.2
(-3)
A 		12.7
(1.5)
P 		16.5
(3)
P 		15
B 0.6
(-3)
A 		2.9
(-2.7)
A 		5.5
(-2.3)
A 		7.6
(-2)
A 		18.1
(-0.6)
P 		44.3
(3)
P 		44
C 0.6
(-3)
A 		8.1
(-2.1)
P 		2.2
(-2.8)
A 		3.9
(-2.6)
A 		9.9
(-1.9)
A 		52.6
(3)
P 		52
avr 1.2
(-3) 		5.4
(-2.3) 		4.4
(-2.5) 		4.2
(-2.5) 		13.6
(-1) 		37.8
(3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175286_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20742
Sequence Type Exemplar sequence
Representative Public ID AV184387 NCBI
Target Description AV184387_rc /REP_DB=TREMBL Accession /GB=AV184387 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk663g9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000030971 ENSEMBL cdna:SNAP chromosome:CEL140:II:3809257:3813339:1 11/11 None
GENEFINDER00000030983 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3809233:3811586:1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3809301-3809581(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68781 Hypothetical protein F54D10.3 [Caenorhabditis elegans] ref|NP_494658.1| F54D10.3 [Caenorhabditis elegans] 1.0E-166
blast AAB70932 Hypothetical protein C41H7.4 [Caenorhabditis elegans] ref|NP_494422.1| C41H7.4 [Caenorhabditis elegans] 2.0E-21
blast CAE59326 Hypothetical protein CBG02668 [Caenorhabditis briggsae] 4.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR005020 EMBL-EBI Protein of unknown function DUF278 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000030971 1 83-105
GENEFINDER00000030983 1 91-109
Sequence
Target Sequence 
>C. ELEGANS:175286_AT
caaatctcattgtcaaagttggtcaactacgcgtcgagctcaccacaagaatgctcaact
tgttccaaaagctgcaattccagcagttgccggttcgtcagaggatggtcagagtgggac
cagtagaagaagctccaggagctgagtgggtggaataccaggatcgtatcgagttgtaca
atacaaatgagatgaagctcatttatttcgtgtgtgcgatgaatattctgttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAATCTCATTGTCAAAGTTGGTCA 433 193 16 Antisense
AAAGTTGGTCAACTACGCGTCGAGC 624 119 30 Antisense
GCGTCGAGCTCACCACAAGAATGCT 19 293 46 Antisense
ATGCTCAACTTGTTCCAAAAGCTGC 417 41 66 Antisense
TCCAAAAGCTGCAATTCCAGCAGTT 5 589 79 Antisense
GTTGCCGGTTCGTCAGAGGATGGTC 131 441 101 Antisense
AAGCTCCAGGAGCTGAGTGGGTGGA 96 151 145 Antisense
GAGTGGGTGGAATACCAGGATCGTA 73 401 159 Antisense
CCAGGATCGTATCGAGTTGTACAAT 53 271 173 Antisense
AAGCTCATTTATTTCGTGTGTGCGA 24 151 210 Antisense
GTGTGTGCGATGAATATTCTGTTCC 235 489 225 Antisense
Sequence Source Affymetrix Proprietary Database