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[175284_at]

Description AU115520_rc /REP_DB=TREMBL Accession /GB=AU115520 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk733f1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 03      4grp_high_8_8 > 34      6grp_highest_nonorm > 90      6grp_total > 24      4grp_total > 45      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 326
1 2 3 4 range
A 363.9
(3)
P 		207.5
(0.1)
P 		76.3
(-2.4)
P 		42.2
(-3)
M 		322
B 260.3
(3)
P 		159.7
(-0.2)
P 		69.3
(-3)
P 		106.1
(-1.8)
P 		191
C 368.2
(3)
P 		206.3
(-0.5)
P 		114.2
(-2.5)
P 		91.7
(-3)
P 		277
avr 330.8
(3) 		191.2
(-0.3) 		86.6
(-2.8) 		80
(-3) 		251

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 235
1 2 3 4 5 6 range
A 234.7
(3)
P 		202.2
(1.8)
P 		202.8
(1.8)
P 		118.5
(-1.4)
P 		127.1
(-1.1)
P 		75.7
(-3)
P 		159
B 311
(3)
P 		243.1
(1.1)
P 		233.5
(0.8)
P 		95.5
(-3)
P 		120.4
(-2.3)
P 		144.8
(-1.6)
P 		216
C 174.7
(-0.3)
P 		286.7
(3)
P 		154.3
(-0.9)
P 		142.8
(-1.2)
P 		82.9
(-3)
P 		126.4
(-1.7)
P 		204
avr 240.1
(2.8) 		244
(3) 		196.9
(0.9) 		118.9
(-2.6) 		110.1
(-3) 		115.6
(-2.8) 		134
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 132.5
(3)
P 		45
(-1.2)
P 		19.9
(-2.3)
P 		6.2
(-3)
M 		126
B 83
(3)
P 		39.4
(-0.9)
P 		16
(-3)
P 		22.6
(-2.4)
P 		67
C 121.9
(3)
P 		59.3
(-0.5)
P 		39.8
(-1.6)
P 		15.5
(-3)
P 		106
avr 112.5
(3) 		47.9
(-1) 		25.2
(-2.4) 		14.8
(-3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 43.3
(-0.2)
P 		71.9
(3)
P 		44.2
(-0.1)
P 		30.1
(-1.7)
P 		38.3
(-0.8)
P 		18.4
(-3)
P 		54
B 108.2
(3)
P 		80.9
(1)
P 		56.7
(-0.7)
P 		25.3
(-3)
P 		48.9
(-1.3)
P 		54
(-0.9)
P 		83
C 64.8
(0.8)
P 		87.5
(3)
P 		39.3
(-1.8)
P 		28.7
(-2.8)
P 		26.8
(-3)
P 		42.3
(-1.5)
P 		61
avr 72.1
(2.1) 		80.1
(3) 		46.7
(-0.8) 		28
(-3) 		38
(-1.8) 		38.2
(-1.8) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175284_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20209
Sequence Type Exemplar sequence
Representative Public ID AU115520 NCBI
Target Description AU115520_rc /REP_DB=TREMBL Accession /GB=AU115520 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk733f1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000034784 ENSEMBL cdna:SNAP chromosome:CEL140:I:7365370:7367105:-1 11/11 None
GENEFINDER00000034797 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7365370:7367786:-1 11/11 None
F07A5.4 ENSEMBL cdna:known chromosome:CEL140:I:7365310:7367230:-1 gene:F07A5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7365250-7365530(-) 100.0 100.0
Public Domain and Genome References
Ensembl F07A5.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96616 Hypothetical protein F07A5.4 [Caenorhabditis elegans] ref|NP_492082.1| F07A5.4 [Caenorhabditis elegans] 1.0E-150
blast CAE66602 Hypothetical protein CBG11927 [Caenorhabditis briggsae] 1.0E-135
blast CAE66602 Hypothetical protein CBG11927 [Caenorhabditis briggsae] 1.0E-131
blast CAA96616 Hypothetical protein F07A5.4 [Caenorhabditis elegans] ref|NP_492082.1| F07A5.4 [Caenorhabditis elegans] 3.0E-98
blast CAE66602 Hypothetical protein CBG11927 [Caenorhabditis briggsae] 6.0E-84
blast CAA96616 Hypothetical protein F07A5.4 [Caenorhabditis elegans] ref|NP_492082.1| F07A5.4 [Caenorhabditis elegans] 2.0E-64
blast AAN60526 Colmedin (collagen plus olfactomedin) family protein 2 [Caenorhabditis elegans] ref|NP_491804.2| COlmedin (collagen plus olFactomedin) family member (cof-2) [Caenorhabditis elegans] gb|AAR87492.1| collagen/olfactomedin domain containing protein 2 [Caenorhabditis elegans] 5.0E-17
Sequence
Target Sequence 
>C. ELEGANS:175284_AT
caacaatgtgtaatgcgttcgtcagatgtgcaattttatactctgtagagtgtgatggaa
ctgtgacacctgtctatgacttttatagtcacacatatattcaaggaagaactacagaat
gggaaggactttctcagccaatttgcaatgtacagtatgaccctaatagcaaatcaattg
ctgtttacgcaaatgcaaagatctacaaagttcccgtacaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACAATGTGTAATGCGTTCGTCAG 351 189 16 Antisense
GCGTTCGTCAGATGTGCAATTTTAT 21 291 30 Antisense
GATGTGCAATTTTATACTCTGTAGA 418 409 40 Antisense
GTGATGGAACTGTGACACCTGTCTA 306 483 67 Antisense
GTGACACCTGTCTATGACTTTTATA 606 481 78 Antisense
GACTTTTATAGTCACACATATATTC 165 373 93 Antisense
GGAAGGACTTTCTCAGCCAATTTGC 270 529 137 Antisense
TTCTCAGCCAATTTGCAATGTACAG 3 691 146 Antisense
AATGTACAGTATGACCCTAATAGCA 650 163 162 Antisense
ATCAATTGCTGTTTACGCAAATGCA 640 25 188 Antisense
AGATCTACAAAGTTCCCGTACAACA 523 61 214 Antisense
Sequence Source Affymetrix Proprietary Database