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[175283_at]

Description AV199935_rc /REP_DB=TREMBL Accession /GB=AV199935 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk553g8 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 28      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_total > 27      4grp_total > 23      6grp_cgc > 13      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 130.3
(2.4)
P 		90.8
(-3)
P 		96.5
(-2.2)
P 		134.8
(3)
P 		44
B 127.7
(3)
P 		48.9
(-2.3)
P 		38.7
(-3)
P 		120.9
(2.5)
P 		89
C 145.1
(3)
P 		74
(-3)
P 		83.3
(-2.2)
P 		75.9
(-2.8)
P 		71
avr 134.4
(3) 		71.2
(-3) 		72.8
(-2.8) 		110.5
(0.7) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 195.9
(3)
P 		107.5
(-0.3)
P 		66.5
(-1.8)
P 		34.5
(-3)
A 		83.6
(-1.2)
P 		105.4
(-0.4)
P 		161
B 160.9
(3)
P 		119.8
(0.8)
P 		49.1
(-3)
P 		55.5
(-2.7)
P 		68.7
(-1.9)
P 		68.4
(-2)
P 		112
C 177.7
(3)
P 		116.5
(0.3)
P 		61.3
(-2)
P 		62
(-2)
A 		39.4
(-3)
P 		66.2
(-1.8)
P 		138
avr 178.2
(3) 		114.6
(0) 		59
(-2.6) 		50.7
(-3) 		63.9
(-2.4) 		80
(-1.6) 		128
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 47.4
(3)
P 		19.7
(-3)
P 		25.2
(-1.8)
P 		19.7
(-3)
P 		28
B 40.7
(3)
P 		12.1
(-2.4)
P 		9
(-3)
P 		25.8
(0.2)
P 		32
C 48
(3)
P 		21.3
(-1.6)
P 		29
(-0.2)
P 		12.8
(-3)
P 		35
avr 45.4
(3) 		17.7
(-3) 		21.1
(-2.3) 		19.4
(-2.6) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 36.1
(2.6)
P 		38.2
(3)
P 		14.5
(-1.8)
P 		8.7
(-3)
A 		25.2
(0.4)
P 		25.7
(0.5)
P 		30
B 56
(3)
P 		39.9
(0.8)
P 		11.9
(-3)
P 		14.7
(-2.6)
P 		27.9
(-0.8)
P 		25.5
(-1.1)
P 		44
C 65.9
(3)
P 		35.6
(-0.4)
P 		15.6
(-2.7)
P 		12.5
(-3)
A 		12.7
(-3)
P 		22.2
(-1.9)
P 		53
avr 52.7
(3) 		37.9
(0.8) 		14
(-2.7) 		12
(-3) 		21.9
(-1.5) 		24.5
(-1.2) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175283_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20945
Sequence Type Exemplar sequence
Representative Public ID AV199935 NCBI
Target Description AV199935_rc /REP_DB=TREMBL Accession /GB=AV199935 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk553g8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067241(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067241 NCBI Caenorhabditis elegans Enhancer of PolyComb-like family member (epc-1) (epc-1) mRNA, complete cds. 11/11 None
Y111B2A.11 ENSEMBL cdna:known chromosome:CEL140:III:12599179:12608342:-1 gene:Y111B2A.11 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12599396-12599798(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol epc-1
Ensembl Y111B2A.11
Entrez Gene 176679 Entrez gene
SwissProt Q9NEX4 EMBL-EBI
WormBase CE36670 Wormbase
Functional Annotations
Ortholog
ID Title Organism
RG-U34B:RC_AA849954_AT enhancer of polycomb homolog 2 (Drosophila) (predicted) rn
RG-U34B:RC_AI013482_AT enhancer of polycomb homolog 2 (Drosophila) (predicted) rn
RAE230B:1382120_AT enhancer of polycomb homolog 2 (Drosophila) (predicted) rn
RAT230_2:1382120_AT enhancer of polycomb homolog 2 (Drosophila) (predicted) rn
RAE230B:1383467_AT enhancer of polycomb homolog 2 (Drosophila) (predicted) rn
RAT230_2:1383467_AT enhancer of polycomb homolog 2 (Drosophila) (predicted) rn
RAE230B:1379694_AT Enhancer of polycomb homolog 2 (Drosophila) (predicted) rn
RAT230_2:1379694_AT Enhancer of polycomb homolog 2 (Drosophila) (predicted) rn
RG-U34B:RC_AA964222_AT Enhancer of polycomb homolog 2 (Drosophila) (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAC35840 Hypothetical protein Y111B2A.11 [Caenorhabditis elegans] ref|NP_499642.2| Enhancer of PolyComb-like family member (epc-1) [Caenorhabditis elegans] gb|AAS65428.1| enhancer of polycomb [Caenorhabditis elegans] 0.0
blast CAE72836 Hypothetical protein CBG20126 [Caenorhabditis briggsae] 0.0
blast XP_786911 PREDICTED: similar to enhancer of polycomb 1 [Strongylocentrotus purpuratus] 7.0E-45
Sequence
Target Sequence 
>C. ELEGANS:175283_AT
ctctctcagtctcttcttaatgatcttcgaaactatttttatttccctcattaacaatta
cgaggtcgtctttttttttccccaccccccactgtttggtgtaatttttgtgttcgggga
ggttttttgtgtgtggatttttggattttttggattttttcaacaaaaaattcccccgaa
atcaaaattttttcccattttcccctcaatattagtactgttgtataaataaacttgctc
tctctctctctctcgaaatctcctactattattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTCTCAGTCTCTTCTTAATGATC 432 231 61 Antisense
GTCTCTTCTTAATGATCTTCGAAAC 226 471 69 Antisense
AATGATCTTCGAAACTATTTTTATT 675 163 79 Antisense
TATTTTTATTTCCCTCATTAACAAT 312 663 94 Antisense
TCATTAACAATTACGAGGTCGTCTT 172 617 108 Antisense
TGGTGTAATTTTTGTGTTCGGGGAG 530 553 157 Antisense
TGTTCGGGGAGGTTTTTTGTGTGTG 118 547 171 Antisense
TTGTGTGTGGATTTTTGGATTTTTT 675 707 187 Antisense
CCATTTTCCCCTCAATATTAGTACT 427 269 255 Antisense
TATAAATAAACTTGCTCTCTCTCTC 122 661 284 Antisense
CTCTCGAAATCTCCTACTATTATTT 389 231 310 Antisense
Sequence Source Affymetrix Proprietary Database