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[175281_s_at]

Description AV184281_rc /REP_DB=TREMBL Accession /GB=AV184281 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk662d4 : 3prime end, single read.
Cluster 6grp_total > 90      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 8.2
(-2.2)
A 		5.2
(-3)
A 		7.5
(-2.4)
A 		26.5
(3)
A 		21
B 9.1
(-1.4)
A 		4.4
(-3)
A 		6.3
(-2.3)
A 		21.8
(3)
A 		17
C 13.6
(3)
A 		3.4
(-3)
A 		3.7
(-2.8)
A 		13.6
(3)
A 		10
avr 10.3
(-0.8) 		4.3
(-3) 		5.8
(-2.4) 		20.6
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 17.7
(2.8)
A 		13.8
(1.2)
A 		3.3
(-3)
A 		8.4
(-1)
A 		11
(0.1)
A 		18.3
(3)
A 		15
B 2.8
(-2.5)
A 		3.3
(-2.1)
A 		9.7
(3)
A 		7.5
(1.2)
A 		3.7
(-1.8)
A 		2.2
(-3)
A 		8
C 5.3
(-2.2)
A 		12.4
(2.7)
A 		4.2
(-3)
A 		12.8
(3)
A 		6.4
(-1.5)
A 		5.9
(-1.8)
A 		9
avr 8.6
(1.2) 		9.8
(3) 		5.7
(-3) 		9.6
(2.7) 		7
(-1.1) 		8.8
(1.5) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 3
(1.1)
A 		1.1
(-3)
A 		2
(-1.1)
A 		3.9
(3)
A 		3
B 2.9
(-0)
A 		1.1
(-3)
A 		1.5
(-2.3)
A 		4.7
(3)
A 		4
C 4.5
(3)
A 		1
(-3)
A 		1.3
(-2.5)
A 		2.3
(-0.8)
A 		4
avr 3.5
(2.8) 		1.1
(-3) 		1.6
(-1.8) 		3.6
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 3.3
(0.7)
A 		4.9
(3)
A 		0.7
(-3)
A 		2.1
(-1)
A 		3.3
(0.7)
A 		4.5
(2.4)
A 		4
B 1
(-2.2)
A 		1.1
(-1.8)
A 		2.3
(3)
A 		2
(1.8)
A 		1.5
(-0.2)
A 		0.8
(-3)
A 		2
C 2
(-1)
A 		3.8
(3)
A 		1.1
(-3)
A 		2.6
(0.3)
A 		2.1
(-0.8)
A 		2
(-1)
A 		3
avr 2.1
(-0.8) 		3.3
(3) 		1.4
(-3) 		2.2
(-0.5) 		2.3
(-0.2) 		2.4
(0.2) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175281_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21227
Sequence Type Exemplar sequence
Representative Public ID AV184281 NCBI
Target Description AV184281_rc /REP_DB=TREMBL Accession /GB=AV184281 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk662d4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065052(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065052 NCBI Caenorhabditis elegans Y46E12A.3 (Y46E12A.3) mRNA, complete cds. 11/11 A 
Y46E12A.3 ENSEMBL cdna:known chromosome:CEL140:III:1752172:1754931:-1 gene:Y46E12A.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1752194-1752763(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y46E12A.3
Entrez Gene 175323 Entrez gene
SwissProt Q9N3V8 EMBL-EBI
WormBase CE28265 Wormbase
Functional Annotations
Ortholog
ID Title Organism
HG-U95D:67354_AT similar to CG12206-PA hs
RAE230A:1374367_AT similar to CG12206-PA, isoform A rn
RAT230_2:1374367_AT similar to CG12206-PA, isoform A rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60612 Hypothetical protein Y46E12A.3 [Caenorhabditis elegans] ref|NP_497453.1| Y46E12A.3 [Caenorhabditis elegans] 1.0E-133
blast CAE69092 Hypothetical protein CBG15114 [Caenorhabditis briggsae] 7.0E-97
blast XP_371694 PREDICTED: similar to CG12206-PA [Homo sapiens] 2.0E-21
Protein Domains
Database ID Description E-Value
scop a.140.2.SAP domain All alpha proteins; LEM/SAP HeH motif; SAP domain; SAP domain 1.79999995231628
Sequence
Target Sequence 
>C. ELEGANS:175281_S_AT
gattccctaccactgatctatgtggatggctattttttggggaatgaaaagacgattgtg
gagctgaatgatgtaaaattactggacaacattttggggaaatatcagaatcaggctcca
agttctgtgtgctcagagtgtggaaatcggggatacattgtgtgtcgaatgtgccacggg
agccgccggcggcaccagcaaaatgccacgtcatctgttgaaaatccatttgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCCCTACCACTGATCTATGTGG 587 431 16 Antisense
TCTATGTGGATGGCTATTTTTTGGG 230 615 32 Antisense
AATCAGGCTCCAAGTTCTGTGTGCT 103 171 124 Antisense
AAGTTCTGTGTGCTCAGAGTGTGGA 70 157 135 Antisense
TGCTCAGAGTGTGGAAATCGGGGAT 391 581 145 Antisense
GAAATCGGGGATACATTGTGTGTCG 88 363 158 Antisense
TGTGTGTCGAATGTGCCACGGGAGC 645 555 174 Antisense
CCGGCGGCACCAGCAAAATGCCACG 286 265 201 Antisense
CGGCACCAGCAAAATGCCACGTCAT 541 241 205 Antisense
GCCACGTCATCTGTTGAAAATCCAT 504 279 220 Antisense
GTCATCTGTTGAAAATCCATTTGGA 662 467 225 Antisense
Sequence Source Affymetrix Proprietary Database