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[175278_at]

Description AV200873_rc /REP_DB=TREMBL Accession /GB=AV200873 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk582c5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 42      4grp_highest_8_8 > 54      4grp_high_8_8 > 09      6grp_highest_nonorm > 47      6grp_total > 30      4grp_total > 22      6grp_highest_sub > 02_03      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6610
1 2 3 4 range
A 7678.7
(3)
P 		3836.8
(-0.8)
P 		1669.7
(-3)
P 		5935.8
(1.3)
P 		6009
B 8280.1
(3)
P 		2989.5
(-2)
P 		1869
(-3)
P 		6346.3
(1.2)
P 		6411
C 7858.4
(2.9)
P 		2526
(-2.3)
P 		1780.3
(-3)
P 		7963.3
(3)
P 		6183
avr 7939.1
(3) 		3117.4
(-1.7) 		1773
(-3) 		6748.5
(1.8) 		6166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2205
1 2 3 4 5 6 range
A 3568
(0.2)
P 		3895.9
(1.1)
P 		4584.1
(3)
P 		3388.5
(-0.3)
P 		3200.7
(-0.8)
P 		2378.8
(-3)
P 		2205
B 3538.9
(-0.5)
P 		4160.4
(2.3)
P 		4329.9
(3)
P 		3818.3
(0.8)
P 		3795.8
(0.7)
P 		2957.3
(-3)
P 		1373
C 2703.5
(-3)
P 		4406.9
(3)
P 		3257.5
(-1)
P 		4123.3
(2)
P 		2959.9
(-2.1)
P 		3198.5
(-1.3)
P 		1703
avr 3270.1
(-1.1) 		4154.4
(3) 		4057.2
(2.6) 		3776.7
(1.3) 		3318.8
(-0.8) 		2844.9
(-3) 		1310
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2363
1 2 3 4 range
A 2795.8
(3)
P 		832.9
(-2)
P 		436.5
(-3)
P 		868.9
(-1.9)
P 		2359
B 2640.5
(3)
P 		738.3
(-2.2)
P 		433.1
(-3)
P 		1352.4
(-0.5)
P 		2207
C 2601.4
(3)
P 		726.2
(-2.7)
P 		620.5
(-3)
P 		1342.7
(-0.8)
P 		1981
avr 2679.2
(3) 		765.8
(-2.3) 		496.7
(-3) 		1188
(-1.1) 		2183

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 963
1 2 3 4 5 6 range
A 657.7
(-2.4)
P 		1385.6
(3)
P 		998.3
(0.1)
P 		859.4
(-0.9)
P 		965.8
(-0.1)
P 		579.2
(-3)
P 		806
B 1231.4
(-0.5)
P 		1384.8
(1.2)
P 		1051.4
(-2.5)
P 		1011.3
(-3)
P 		1542.2
(3)
P 		1102.8
(-2)
P 		531
C 1002.1
(-1)
P 		1344.7
(3)
P 		829.1
(-3)
P 		829.2
(-3)
P 		957.8
(-1.5)
P 		1070.7
(-0.2)
P 		516
avr 963.7
(-2.2) 		1371.7
(3) 		959.6
(-2.2) 		900
(-3) 		1155.3
(0.2) 		917.6
(-2.8) 		472
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175278_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20244
Sequence Type Exemplar sequence
Representative Public ID AV200873 NCBI
Target Description AV200873_rc /REP_DB=TREMBL Accession /GB=AV200873 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk582c5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV200873
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV200873 AV200873_rc /REP_DB=TREMBL Accession /GB=AV200873 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk582c5 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11245907-11246187(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175278_AT
gagcgtggtgtttctttgcaccatcccttgttcttgcctttcgggattctgtgactgact
cattgcacataacaccaaatgctttgaggacaaagcagcattttgaaagggcggcatgtg
gaagtgttctataatcacttctcatgttgcactgagtggactttggagacgtgcataaag
cgcatgactctaaagcccacgcggtctctgagcagggagcgtcacgtccttacgagtata
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCGTGGTGTTTCTTTGCACCATC 136 387 13 Antisense
CTTTCGGGATTCTGTGACTGACTCA 403 223 50 Antisense
GACTGACTCATTGCACATAACACCA 495 375 65 Antisense
AAGCAGCATTTTGAAAGGGCGGCAT 630 149 105 Antisense
AGGGCGGCATGTGGAAGTGTTCTAT 105 57 120 Antisense
ATCACTTCTCATGTTGCACTGAGTG 491 27 146 Antisense
ACTGAGTGGACTTTGGAGACGTGCA 136 97 163 Antisense
GAGACGTGCATAAAGCGCATGACTC 104 395 178 Antisense
AAAGCGCATGACTCTAAAGCCCACG 285 123 189 Antisense
ACGCGGTCTCTGAGCAGGGAGCGTC 539 91 211 Antisense
GAGCGTCACGTCCTTACGAGTATAT 376 387 229 Antisense
Sequence Source Affymetrix Proprietary Database