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[175277_at]

Description AV175992_rc /REP_DB=TREMBL Accession /GB=AV175992 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk499f8 : 3prime end, single read.
Cluster 6grp_total > 95      4grp_total > 23      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 19.4
(3)
A 		6.8
(-3)
A 		18.8
(2.7)
A 		12.2
(-0.4)
A 		13
B 27.9
(3)
A 		16.9
(0.4)
A 		8.2
(-1.7)
A 		2.8
(-3)
A 		25
C 19.1
(-0.5)
A 		4.8
(-2.8)
A 		3.4
(-3)
A 		41.2
(3)
A 		38
avr 22.1
(3) 		9.5
(-3) 		10.1
(-2.7) 		18.7
(1.4) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 4.6
(-3)
A 		17.4
(-0.2)
A 		12.6
(-1.2)
A 		22.3
(0.9)
A 		31.7
(3)
A 		11
(-1.6)
A 		27
B 19
(2.3)
A 		2.4
(-2.9)
A 		5.5
(-1.9)
A 		21.2
(3)
A 		2
(-3)
A 		12.3
(0.2)
A 		19
C 6.6
(-0.9)
A 		6.3
(-1.1)
A 		3.4
(-2.4)
A 		2.6
(-2.8)
A 		2.1
(-3)
A 		15.2
(3)
A 		13
avr 10.1
(-0.9) 		8.7
(-1.9) 		7.2
(-3) 		15.4
(3) 		11.9
(0.4) 		12.8
(1.1) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 7.1
(3)
A 		1.5
(-3)
A 		4.9
(0.6)
A 		1.8
(-2.7)
A 		6
B 8.9
(3)
A 		4.2
(-0.4)
A 		1.9
(-2.1)
A 		0.6
(-3)
A 		8
C 6.3
(2.4)
A 		1.4
(-2.8)
A 		1.2
(-3)
A 		6.9
(3)
A 		6
avr 7.4
(3) 		2.4
(-3) 		2.7
(-2.6) 		3.1
(-2.2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.8
(-3)
A 		6.2
(0.7)
A 		2.7
(-1.7)
A 		5.7
(0.3)
A 		9.6
(3)
A 		2.7
(-1.7)
A 		9
B 6.6
(3)
A 		0.8
(-3)
A 		1.3
(-2.5)
A 		5.6
(2)
A 		0.8
(-3)
A 		4.6
(0.9)
A 		6
C 2.4
(-0.5)
A 		1.9
(-1.2)
A 		0.9
(-2.5)
A 		0.5
(-3)
A 		0.7
(-2.7)
A 		5.1
(3)
A 		5
avr 3.3
(1.1) 		3
(0.4) 		1.6
(-3) 		3.9
(2.5) 		3.7
(2) 		4.1
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175277_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20962
Sequence Type Exemplar sequence
Representative Public ID AV175992 NCBI
Target Description AV175992_rc /REP_DB=TREMBL Accession /GB=AV175992 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk499f8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV175992
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV175992 AV175992_rc /REP_DB=TREMBL Accession /GB=AV175992 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk499f8 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12777064-12777344(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175277_AT
ggcatagtgtcttgtttttggagcagcaaaacgaatgggtgagtgtgctgacagcttttt
tgtttgggcatgtgataactgctccccggggagccgtgaacttgagagcccgggaaagga
gttttcgtgtttctcagtcctgacaactttacgatggcaataggagacaaggaaatggaa
taaataatcagtgagccgaagatcagaatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCATAGTGTCTTGTTTTTGGAGCA 287 537 27 Antisense
GGAGCAGCAAAACGAATGGGTGAGT 621 519 46 Antisense
GAATGGGTGAGTGTGCTGACAGCTT 291 333 59 Antisense
GCTGACAGCTTTTTTGTTTGGGCAT 164 297 73 Antisense
TTTGGGCATGTGATAACTGCTCCCC 322 667 89 Antisense
ATAACTGCTCCCCGGGGAGCCGTGA 21 25 101 Antisense
GGAGCCGTGAACTTGAGAGCCCGGG 574 521 116 Antisense
TGAGAGCCCGGGAAAGGAGTTTTCG 299 567 129 Antisense
TTTTCGTGTTTCTCAGTCCTGACAA 14 677 148 Antisense
GTCCTGACAACTTTACGATGGCAAT 445 475 163 Antisense
ATCAGTGAGCCGAAGATCAGAATGT 578 27 213 Antisense
Sequence Source Affymetrix Proprietary Database