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[175276_at]

Description AV183883_rc /REP_DB=TREMBL Accession /GB=AV183883 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk657d4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 86      4grp_highest_8_8 > 37      4grp_high_8_8 > 01      6grp_highest_nonorm > 93      6grp_total > 77      4grp_total > 07      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 290.9
(2)
P 		185.7
(-3)
P 		240.8
(-0.4)
P 		313.1
(3)
P 		127
B 248.1
(0.7)
P 		153.8
(-3)
P 		204.2
(-1)
P 		304.8
(3)
P 		151
C 280
(1.8)
P 		211
(-3)
P 		288
(2.3)
P 		298
(3)
P 		87
avr 273
(1.4) 		183.5
(-3) 		244.3
(-0) 		305.3
(3) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 495
1 2 3 4 5 6 range
A 241.3
(-3)
P 		255.2
(-2.8)
P 		412.5
(-0.3)
P 		320.3
(-1.7)
P 		416.7
(-0.2)
P 		615.8
(3)
P 		375
B 279.9
(-3)
P 		305
(-2.6)
P 		385.9
(-1.5)
P 		363.6
(-1.8)
P 		488.6
(-0.1)
P 		706.4
(3)
P 		427
C 258.2
(-3)
P 		316.5
(-2.3)
P 		264.2
(-2.9)
P 		340.5
(-2)
P 		424.3
(-0.9)
P 		736.4
(3)
P 		478
avr 259.8
(-3) 		292.2
(-2.5) 		354.2
(-1.7) 		341.5
(-1.9) 		443.2
(-0.4) 		686.2
(3) 		426
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 105.9
(3)
P 		40.3
(-3)
P 		62.9
(-0.9)
P 		45.8
(-2.5)
P 		66
B 79.1
(3)
P 		38
(-3)
P 		47.3
(-1.6)
P 		65
(0.9)
P 		41
C 92.7
(2.1)
P 		60.7
(-1.7)
P 		100.4
(3)
P 		50.2
(-3)
P 		50
avr 92.6
(3) 		46.3
(-3) 		70.2
(0.1) 		53.7
(-2) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 219
1 2 3 4 5 6 range
A 44.5
(-3)
P 		90.8
(-0.4)
P 		89.8
(-0.4)
P 		81.2
(-0.9)
P 		125.7
(1.6)
P 		149.9
(3)
P 		105
B 97.4
(-2.9)
P 		101.5
(-2.7)
P 		93.7
(-3)
P 		96.3
(-2.9)
P 		198.5
(0.7)
P 		263.4
(3)
P 		170
C 95.7
(-2)
P 		96.6
(-2)
P 		67.2
(-3)
P 		68.5
(-3)
P 		137.3
(-0.7)
P 		246.5
(3)
P 		179
avr 79.2
(-3) 		96.3
(-2.3) 		83.6
(-2.8) 		82
(-2.9) 		153.8
(0.2) 		219.9
(3) 		141
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175276_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20964
Sequence Type Exemplar sequence
Representative Public ID AV183883 NCBI
Target Description AV183883_rc /REP_DB=TREMBL Accession /GB=AV183883 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk657d4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066312(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066312 NCBI Caenorhabditis elegans ZK688.9 (ZK688.9) mRNA, complete cds. 11/11 A 
SNAP00000043624 ENSEMBL cdna:SNAP chromosome:CEL140:III:7881163:7884063:-1 10/11 None
GENEFINDER00000043638 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7881163:7882595:-1 10/11 None
ZK688.9 ENSEMBL cdna:known chromosome:CEL140:III:7881096:7884878:-1 gene:ZK688.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7881103-7881465(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK688.9
Entrez Gene 176106 Entrez gene
SwissProt P34274 EMBL-EBI
WormBase CE29650 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:253287_AT TIP41-like family protein at
CANINE:1602298_AT similar to TIP41, TOR signalling pathway regulator-like cfa
CANINE_2:CFA.16837.1.S1_AT similar to TIP41, TOR signalling pathway regulator-like cfa
CANINE_2:CFAAFFX.23548.1.S1_AT similar to TIP41, TOR signalling pathway regulator-like cfa
DROSOPHILA_2:1631088_AT dm
DROSGENOME1:153439_AT dm
CHICKEN:GGA.13163.1.S1_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) gga
CHICKEN:GGA.8287.1.S1_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) gga
U133_X3P:HS2.137576.2.S1_3P_S_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) hs
U133_X3P:HS2.137576.1.S1_3P_S_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) hs
U133_X3P:HS.137576.0.A1_3P_X_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) hs
U133_X3P:HS.137576.0.A1_3P_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) hs
U133_X3P:1554351_3P_A_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) hs
HG-U133_PLUS_2:1553677_A_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) hs
HG-U133_PLUS_2:1554351_A_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) hs
HG-U133A_2:214773_X_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) hs
HG-U133_PLUS_2:214773_X_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) hs
HG-U133A:214773_X_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) hs
HG-U133_PLUS_2:228619_X_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) hs
HG-U133B:228619_X_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) hs
HG-U95AV2:33035_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) hs
HG-U95E:88770_R_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) hs
HG-U95E:70787_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) hs
MOUSE430_2:1451587_A_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) mm
MOE430A:1451587_A_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) mm
MOUSE430A_2:1451587_A_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) mm
MU11KSUBA:AA624026_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) mm
MG-U74AV2:104052_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) mm
MOE430A:1433912_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) mm
MOUSE430A_2:1433912_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) mm
MOUSE430_2:1433912_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) mm
MOE430B:1458522_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) (Tiprl), mRNA mm
MOUSE430_2:1458522_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) (Tiprl), mRNA mm
MU19KSUBB:TC33388_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) (Tiprl), mRNA mm
MU19KSUBC:TC37243_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) (Tiprl), mRNA mm
MU19KSUBC:TC37243_G_AT TIP41, TOR signalling pathway regulator-like (S. cerevisiae) (Tiprl), mRNA mm
YEAST_2:1776135_AT Protein that interacts physically and genetically with Tap42p, which regulates protein phosphatase 2A; component of the TOR (target of rapamycin) signaling pathway Sc
Protein Similarities
Method ID Description E-Value
blast NP_498713 ZK688.9 [Caenorhabditis elegans] sp|P34274|YO29_CAEEL Hypothetical protein ZK688.9 in chromosome III 0.0
blast AAL00884 Hypothetical protein ZK688.9 [Caenorhabditis elegans] 0.0
blast AAL00884 Hypothetical protein ZK688.9 [Caenorhabditis elegans] 1.0E-119
blast NP_498713 ZK688.9 [Caenorhabditis elegans] sp|P34274|YO29_CAEEL Hypothetical protein ZK688.9 in chromosome III 1.0E-119
blast CAE66885 Hypothetical protein CBG12266 [Caenorhabditis briggsae] 4.0E-55
blast CAE66885 Hypothetical protein CBG12266 [Caenorhabditis briggsae] 6.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR007303 EMBL-EBI TIP41-like protein 1.2E-55
Pfam IPR007303 EMBL-EBI TIP41-like protein 1.2E-55
Pfam IPR007303 EMBL-EBI TIP41-like protein 1.2E-55
Sequence
Target Sequence 
>C. ELEGANS:175276_AT
gttcttctcagagtatgtgacaccagaattgttggcaacgaattcgatggacatgtcatt
cgtgagtggcaacttcgagaagcaaagtacgggaatcttggtcacgttgatccggaggaa
ttattagatgtagacagagcatggatgcatcttccagttgttgaagagcactttgatcgt
gtatcagttgatcgtgaacgccttttttgaattgtctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCTTCTCAGAGTATGTGACACCA 118 445 26 Antisense
GTGACACCAGAATTGTTGGCAACGA 299 483 42 Antisense
GTTGGCAACGAATTCGATGGACATG 158 437 56 Antisense
GATGGACATGTCATTCGTGAGTGGC 286 407 71 Antisense
GTCATTCGTGAGTGGCAACTTCGAG 154 469 80 Antisense
GCAAAGTACGGGAATCTTGGTCACG 325 317 107 Antisense
ATCTTGGTCACGTTGATCCGGAGGA 309 31 120 Antisense
GAGCATGGATGCATCTTCCAGTTGT 693 387 162 Antisense
AGAGCACTTTGATCGTGTATCAGTT 450 69 190 Antisense
TGTATCAGTTGATCGTGAACGCCTT 412 559 205 Antisense
GTGAACGCCTTTTTTGAATTGTCTC 601 479 219 Antisense
Sequence Source Affymetrix Proprietary Database