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[175275_s_at]

Description AU115789_rc /REP_DB=TREMBL Accession /GB=AU115789 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk736g6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 86      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 96      6grp_total > 77      4grp_total > 04      6grp_highest_sub > In      6grp_cgc > 58      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2193
1 2 3 4 range
A 1000
(-1)
P 		671.5
(-2.3)
P 		486.2
(-3)
P 		2061.2
(3)
P 		1575
B 996.5
(-1.9)
P 		677.9
(-2.8)
P 		598.4
(-3)
P 		2678.8
(3)
P 		2080
C 1015.2
(-1.8)
P 		704.8
(-2.8)
P 		628
(-3)
P 		2531.9
(3)
P 		1904
avr 1003.9
(-1.6) 		684.7
(-2.6) 		570.9
(-3) 		2424
(3) 		1853

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1059
1 2 3 4 5 6 range
A 424.5
(-3)
P 		701.2
(-0.5)
P 		1091.9
(3)
P 		818.2
(0.5)
P 		1040
(2.5)
P 		1050.9
(2.6)
P 		667
B 916.6
(-1.9)
P 		787.4
(-3)
P 		1014.6
(-1)
P 		885.4
(-2.2)
P 		965.6
(-1.5)
P 		1483
(3)
P 		696
C 683.2
(-2.1)
P 		782.1
(-1.4)
P 		570.7
(-3)
P 		689
(-2.1)
P 		766.3
(-1.5)
P 		1359.6
(3)
P 		789
avr 674.8
(-3) 		756.9
(-2.2) 		892.4
(-0.9) 		797.5
(-1.8) 		924
(-0.6) 		1297.8
(3) 		623
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 444
1 2 3 4 range
A 364.1
(3)
P 		145.8
(-2.5)
P 		127.1
(-3)
P 		301.7
(1.4)
P 		237
B 317.8
(-0.5)
P 		167.4
(-2.6)
P 		138.7
(-3)
P 		570.8
(3)
P 		432
C 336.1
(0.6)
P 		202.6
(-3)
P 		218.9
(-2.6)
P 		426.9
(3)
P 		224
avr 339.3
(0.9) 		171.9
(-2.8) 		161.6
(-3) 		433.1
(3) 		272

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 475
1 2 3 4 5 6 range
A 78.3
(-3)
P 		249.4
(1.4)
P 		237.8
(1.1)
P 		207.5
(0.3)
P 		313.8
(3)
P 		255.9
(1.5)
P 		236
B 318.9
(-1.4)
P 		262.1
(-2.5)
P 		246.4
(-2.8)
P 		234.5
(-3)
P 		392.3
(-0)
P 		553
(3)
P 		319
C 253.2
(-0.8)
P 		238.6
(-1.1)
P 		145.3
(-2.9)
P 		138.6
(-3)
P 		248
(-0.9)
P 		455.1
(3)
P 		317
avr 216.8
(-2.4) 		250
(-1.5) 		209.8
(-2.6) 		193.5
(-3) 		318
(0.3) 		421.3
(3) 		228
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175275_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21309
Sequence Type Exemplar sequence
Representative Public ID AU115789 NCBI
Target Description AU115789_rc /REP_DB=TREMBL Accession /GB=AU115789 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk736g6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068885(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068885 NCBI Caenorhabditis elegans IntraMembrane Protease (IMPAS) family member (imp-3) (imp-3) mRNA, complete cds. 11/11 A 
C33H5.11.1 ENSEMBL cdna:known chromosome:CEL140:IV:7785996:7789445:-1 gene:C33H5.11 11/11 A 
C33H5.11.2 ENSEMBL cdna:known chromosome:CEL140:IV:7785996:7789450:-1 gene:C33H5.11 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004480 7/11 Cross Hyb Matching Probes None
GENEFINDER00000004508 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7786065-7786401(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol imp-3
Ensembl C33H5.11
Entrez Gene 177565 Entrez gene
SwissProt Q18408 EMBL-EBI
WormBase CE29696 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8717 D-alanyl-D-alanine endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA82268 Hypothetical protein C33H5.11 [Caenorhabditis elegans] ref|NP_501286.2| IntraMembrane Protease (IMPAS) family member (imp-3) [Caenorhabditis elegans] 0.0
blast CAE70884 Hypothetical protein CBG17674 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501286.2 7 5-23,43-65,298-320,340-362,382-404,458-480,487-506
C33H5.11.1 7 5-23,43-65,298-320,340-362,382-404,458-480,487-506
C33H5.11.2 7 5-23,43-65,298-320,340-362,382-404,458-480,487-506
Sequence
Target Sequence 
>C. ELEGANS:175275_S_AT
tcagttttcttttctatatggagatcaaaaacaactccggctatggttctcccagcaatt
tctgcaatcatcttttcaattggatttgcaaatcataccgacgacttatggaaatttatg
attaaacactaacaatcgattcaaaattaatgtaaatagataatcttacttttctacatg
cttgttcatattcatatctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGTTTTCTTTTCTATATGGAGAT 431 623 48 Antisense
CAAAAACAACTCCGGCTATGGTTCT 301 191 73 Antisense
CTATGGTTCTCCCAGCAATTTCTGC 329 225 88 Antisense
GGTTCTCCCAGCAATTTCTGCAATC 388 507 92 Antisense
GCAATTTCTGCAATCATCTTTTCAA 441 323 102 Antisense
GATTTGCAAATCATACCGACGACTT 495 427 130 Antisense
ATACCGACGACTTATGGAAATTTAT 662 21 142 Antisense
ATTAAACACTAACAATCGATTCAAA 140 11 168 Antisense
GATAATCTTACTTTTCTACATGCTT 110 423 206 Antisense
ATCTTACTTTTCTACATGCTTGTTC 625 31 210 Antisense
ACATGCTTGTTCATATTCATATCTG 358 107 223 Antisense
Sequence Source Affymetrix Proprietary Database