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[175274_s_at]

Description AU115852_rc /REP_DB=TREMBL Accession /GB=AU115852 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk737f1 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 98      4grp_high_8_8 > 12      6grp_total > 98      4grp_total > 12      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 215.4
(-1.1)
P 		186.5
(-3)
A 		193.9
(-2.5)
P 		280.1
(3)
P 		94
B 181.5
(-3)
P 		220.4
(-0.7)
M 		209.8
(-1.4)
P 		284.8
(3)
P 		103
C 267.7
(0.5)
P 		221.3
(-1.3)
P 		178.1
(-3)
P 		331.7
(3)
P 		154
avr 221.5
(-1.4) 		209.4
(-2.1) 		193.9
(-3) 		298.9
(3) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 435
1 2 3 4 5 6 range
A 178.6
(-2.8)
P 		172.1
(-3)
P 		269.2
(-0.4)
P 		213.2
(-1.9)
P 		398.6
(3)
P 		370.7
(2.3)
P 		227
B 244.9
(-2.6)
P 		228.8
(-3)
P 		238.2
(-2.8)
P 		263.3
(-2.2)
P 		471.6
(2.4)
P 		500
(3)
P 		271
C 102.9
(-3)
P 		181.6
(-1.9)
P 		146
(-2.4)
A 		247.1
(-1)
A 		355.9
(0.5)
P 		537.5
(3)
P 		435
avr 175.5
(-3) 		194.2
(-2.6) 		217.8
(-2.1) 		241.2
(-1.7) 		408.7
(1.8) 		469.4
(3) 		294
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 78.4
(3)
P 		40.5
(-3)
A 		50.7
(-1.4)
P 		41
(-2.9)
P 		38
B 57.9
(1.6)
P 		54.4
(-0.1)
M 		48.6
(-3)
P 		60.7
(3)
P 		12
C 88.6
(3)
P 		63.6
(-1.6)
P 		62.1
(-1.9)
P 		55.9
(-3)
P 		33
avr 75
(3) 		52.8
(-2.9) 		53.8
(-2.7) 		52.5
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 32.9
(-3)
P 		61.2
(-1.1)
P 		58.6
(-1.2)
P 		54.1
(-1.5)
P 		120.3
(3)
P 		90.3
(0.9)
P 		87
B 85.2
(-1.8)
P 		76.2
(-2.2)
P 		57.8
(-3)
P 		69.7
(-2.5)
P 		191.6
(3)
P 		186.5
(2.8)
P 		134
C 38.1
(-3)
P 		55.4
(-2.2)
P 		37.1
(-3)
A 		49.7
(-2.5)
A 		115.2
(0.3)
P 		179.9
(3)
P 		143
avr 52.1
(-2.9) 		64.3
(-2.2) 		51.2
(-3) 		57.8
(-2.6) 		142.4
(2.4) 		152.2
(3) 		101
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175274_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21742
Sequence Type Exemplar sequence
Representative Public ID AU115852 NCBI
Target Description AU115852_rc /REP_DB=TREMBL Accession /GB=AU115852 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk737f1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073097(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073097 NCBI Caenorhabditis elegans ZK287.7 (ZK287.7) mRNA, complete cds. 11/11 A 
SNAP00000034526 ENSEMBL cdna:SNAP chromosome:CEL140:V:9695652:9697269:1 11/11 None
GENEFINDER00000034529 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9695652:9697269:1 11/11 None
ZK287.7 ENSEMBL cdna:known chromosome:CEL140:V:9695482:9697304:1 gene:ZK287.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9696967-9697294(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK287.7
Entrez Gene 179359 Entrez gene
SwissProt Q23459 EMBL-EBI
WormBase CE27557 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94803 Hypothetical protein ZK287.7 [Caenorhabditis elegans] ref|NP_505498.1| ZK287.7 [Caenorhabditis elegans] 0.0
blast CAE72231 Hypothetical protein CBG19344 [Caenorhabditis briggsae] 1.0E-145
Sequence
Target Sequence 
>C. ELEGANS:175274_S_AT
tcgaagtctactcacttcacttccaatttattgccacgtgtacaacacaattttcgaaga
cgtcggtggtcatgaagcacatggtctcgttgcagctgcgaaaccaccggctcatttcat
agcaatgctcgatctacttggtcttcgtcatgcttataaagattttatgaatagatctga
aaaaccttcagaagactcatcgtcttcaacatcacgaacatcggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGAAGTCTACTCACTTCACTTCCA 266 593 26 Antisense
TTCACTTCCAATTTATTGCCACGTG 297 687 41 Antisense
GTGTACAACACAATTTTCGAAGACG 232 485 63 Antisense
GAAGACGTCGGTGGTCATGAAGCAC 602 339 81 Antisense
TGAAGCACATGGTCTCGTTGCAGCT 351 575 98 Antisense
TGGTCTCGTTGCAGCTGCGAAACCA 681 551 107 Antisense
GCTCATTTCATAGCAATGCTCGATC 664 299 135 Antisense
GCAATGCTCGATCTACTTGGTCTTC 16 323 147 Antisense
CTACTTGGTCTTCGTCATGCTTATA 338 227 159 Antisense
AAAACCTTCAGAAGACTCATCGTCT 445 131 206 Antisense
CGTCTTCAACATCACGAACATCGGG 666 245 226 Antisense
Sequence Source Affymetrix Proprietary Database