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[175273_at]

Description AV184943_rc /REP_DB=TREMBL Accession /GB=AV184943 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk671e9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 87      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 92      6grp_total > 78      4grp_total > 02      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 280
1 2 3 4 range
A 313.9
(-1.6)
P 		288.2
(-2.1)
P 		250.3
(-3)
P 		516.8
(3)
P 		267
B 237.8
(-3)
P 		271.5
(-2.2)
P 		236.7
(-3)
P 		499
(3)
P 		262
C 271.5
(-3)
P 		279
(-2.7)
P 		308
(-1.4)
P 		406.5
(3)
P 		135
avr 274.4
(-2.7) 		279.6
(-2.6) 		265
(-3) 		474.1
(3) 		209

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 463
1 2 3 4 5 6 range
A 215.4
(-3)
P 		257.6
(-2.4)
P 		284.1
(-2)
P 		245.7
(-2.5)
P 		489.8
(1.1)
P 		612.8
(3)
P 		397
B 371.5
(-0.5)
P 		225.8
(-3)
P 		340.5
(-1)
P 		316.5
(-1.4)
P 		353
(-0.8)
P 		575.8
(3)
P 		350
C 230.9
(-3)
P 		267.9
(-2.5)
P 		237.7
(-2.9)
P 		251.5
(-2.7)
P 		320.1
(-1.8)
P 		678.8
(3)
P 		448
avr 272.6
(-2.6) 		250.4
(-3) 		287.4
(-2.4) 		271.2
(-2.7) 		387.6
(-0.8) 		622.5
(3) 		372
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 114.3
(3)
P 		62.5
(-3)
P 		65.4
(-2.7)
P 		75.6
(-1.5)
P 		52
B 75.8
(-0.6)
P 		67.1
(-1.6)
P 		54.8
(-3)
P 		106.3
(3)
P 		52
C 89.9
(0.3)
P 		80.2
(-1.2)
P 		107.3
(3)
P 		68.5
(-3)
P 		39
avr 93.3
(3) 		69.9
(-3) 		75.8
(-1.5) 		83.5
(0.5) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 188
1 2 3 4 5 6 range
A 39.7
(-3)
P 		91.6
(-0.2)
P 		61.9
(-1.8)
P 		62.3
(-1.8)
P 		147.8
(2.9)
P 		149.2
(3)
P 		110
B 129.2
(-0.7)
P 		75.2
(-3)
P 		82.7
(-2.7)
P 		83.8
(-2.6)
P 		143.4
(-0.1)
P 		214.7
(3)
P 		140
C 85.6
(-1.8)
P 		81.8
(-1.9)
P 		60.5
(-2.7)
P 		50.6
(-3)
P 		103.6
(-1.2)
P 		227.2
(3)
P 		177
avr 84.8
(-2.1) 		82.9
(-2.2) 		68.4
(-2.9) 		65.6
(-3) 		131.6
(0) 		197
(3) 		131
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175273_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21875
Sequence Type Exemplar sequence
Representative Public ID AV184943 NCBI
Target Description AV184943_rc /REP_DB=TREMBL Accession /GB=AV184943 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk671e9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073852(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073852 NCBI Caenorhabditis elegans F15B9.4 (F15B9.4) mRNA, complete cds. 11/11 None
F15B9.4 ENSEMBL cdna:known chromosome:CEL140:V:13004933:13009560:1 gene:F15B9.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13009224-13009512(+) 99.31 99.31
Public Domain and Genome References
Gene Title
Ensembl F15B9.4
Entrez Gene 179786 Entrez gene
SwissProt Q19479 EMBL-EBI
WormBase CE37351 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3779 actin binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01425 Hypothetical protein F15B9.4 [Caenorhabditis elegans] ref|NP_506253.3| F15B9.4 [Caenorhabditis elegans] 0.0
blast XP_421396 PREDICTED: similar to adenylosuccinate synthetase:ISOTYPE=muscle [Gallus gallus] 1.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR003104 EMBL-EBI Actin-binding FH2 8.1E-75
Sequence
Target Sequence 
>C. ELEGANS:175273_AT
aactattttccgagaagcagctattgcatattcgtgattcaaattacattgcatttatta
ccgcgtcatgtttctcgctcctgatgatgctcgttgtgcatcgtatagacccccattccc
gtaatgcttccctgtattcttcccatatgtatgggcaaaatgttctattcccgtattttt
ttaaattttcttttctgttttgaattcatctaagccatttttatgtactggtcactgtag
caggtct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTATTTTCCGAGAAGCAGCTATT 510 137 26 Antisense
GCAGCTATTGCATATTCGTGATTCA 667 313 42 Antisense
TACATTGCATTTATTACCGCGTCAT 506 643 70 Antisense
TTATTACCGCGTCATGTTTCTCGCT 212 679 80 Antisense
CGCTCCTGATGATGCTCGTTGTGCA 241 255 101 Antisense
TGCTCGTTGTGCATCGTATAGACCC 493 581 113 Antisense
CCCTGTATTCTTCCCATATGTATGG 176 261 155 Antisense
GGGCAAAATGTTCTATTCCCGTATT 346 435 178 Antisense
GTTTTGAATTCATCTAAGCCATTTT 6 449 222 Antisense
AAGCCATTTTTATGTACTGGTCACT 151 149 237 Antisense
ATGTACTGGTCACTGTAGCAGGTCT 699 45 248 Antisense
Sequence Source Affymetrix Proprietary Database