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[175272_at]

Description AV182775_rc /REP_DB=TREMBL Accession /GB=AV182775 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk642d4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 66      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 79      6grp_total > 66      4grp_total > 01      6grp_highest_sub > Da      6grp_high1_sub > Da      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6809
1 2 3 4 range
A 1285.6
(-3)
P 		1384.2
(-2.9)
P 		2060.9
(-2.2)
P 		7132.4
(3)
P 		5847
B 1566.5
(-2.9)
P 		1424.5
(-3)
P 		2002.6
(-2.5)
P 		7946.5
(3)
P 		6522
C 1332.1
(-2.8)
P 		1137.2
(-3)
P 		1875.5
(-2.2)
P 		6606.3
(3)
P 		5469
avr 1394.7
(-2.9) 		1315.3
(-3) 		1979.7
(-2.3) 		7228.4
(3) 		5913

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2672
1 2 3 4 5 6 range
A 1407.1
(-2)
P 		1064.4
(-3)
P 		1310.7
(-2.3)
P 		1250.7
(-2.4)
P 		1172.2
(-2.7)
P 		3050
(3)
P 		1986
B 1356.3
(-2)
P 		918.9
(-3)
P 		1263.6
(-2.2)
P 		1405.7
(-1.9)
P 		974.5
(-2.9)
P 		3504.2
(3)
P 		2585
C 1390.7
(-1.6)
P 		832
(-3)
P 		1672.6
(-0.9)
P 		1556.6
(-1.2)
P 		999.4
(-2.6)
P 		3257.9
(3)
P 		2426
avr 1384.7
(-1.9) 		938.4
(-3) 		1415.6
(-1.8) 		1404.3
(-1.8) 		1048.7
(-2.7) 		3270.7
(3) 		2332
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1393
1 2 3 4 range
A 468.1
(-1.6)
P 		300.5
(-3)
P 		538.8
(-1.1)
P 		1044
(3)
P 		744
B 499.5
(-2.3)
P 		351.8
(-3)
P 		464.1
(-2.5)
P 		1693.4
(3)
P 		1342
C 440.9
(-2.1)
P 		327
(-3)
P 		653.7
(-0.5)
P 		1113.9
(3)
P 		787
avr 469.5
(-2.1) 		326.4
(-3) 		552.2
(-1.6) 		1283.8
(3) 		957

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1053
1 2 3 4 5 6 range
A 259.4
(-3)
P 		378.6
(-1.5)
P 		285.4
(-2.7)
P 		317.2
(-2.3)
P 		353.7
(-1.8)
P 		742.6
(3)
P 		483
B 471.9
(-2)
P 		305.9
(-3)
P 		306.8
(-3)
P 		372.3
(-2.6)
P 		395.9
(-2.5)
P 		1306.7
(3)
P 		1001
C 515.5
(-1.1)
P 		253.9
(-3)
P 		425.7
(-1.8)
P 		313
(-2.6)
P 		323.4
(-2.5)
P 		1090.6
(3)
P 		837
avr 415.6
(-2.2) 		312.8
(-3) 		339.3
(-2.8) 		334.2
(-2.8) 		357.7
(-2.6) 		1046.6
(3) 		734
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175272_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21833
Sequence Type Exemplar sequence
Representative Public ID AV182775 NCBI
Target Description AV182775_rc /REP_DB=TREMBL Accession /GB=AV182775 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk642d4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073740(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073740 NCBI Caenorhabditis elegans F45D3.2 (F45D3.2) mRNA, complete cds. 11/11 None
F45D3.2.1 ENSEMBL cdna:known chromosome:CEL140:V:12543628:12545562:1 gene:F45D3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12545157-12545486(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F45D3.2
Entrez Gene 179716 Entrez gene
SwissProt Q20422 EMBL-EBI
WormBase CE38517 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE75509 Hypothetical protein CBG23522 [Caenorhabditis briggsae] 1.0E-132
blast CAB01503 Hypothetical protein F45D3.2 [Caenorhabditis elegans] ref|NP_506141.2| F45D3.2 [Caenorhabditis elegans] 1.0E-125
blast CAB01503 Hypothetical protein F45D3.2 [Caenorhabditis elegans] ref|NP_506141.2| F45D3.2 [Caenorhabditis elegans] 1.0E-120
blast CAE75509 Hypothetical protein CBG23522 [Caenorhabditis briggsae] 1.0E-99
blast AAT64964 putative protein L3i10 isoform b [Dictyocaulus viviparus] 6.0E-30
blast AAT64964 putative protein L3i10 isoform b [Dictyocaulus viviparus] 8.0E-26
Sequence
Target Sequence 
>C. ELEGANS:175272_AT
gaaatagcccctattttgctctcaaaaactactcactattacgtctcaaggatcaaccgt
tgcgtgtgcatttttcgtctccccgttccattttttgctcttctcttttttttctctttg
actagaactgtttcttttggatggtcaaagaggaaaatttaattttaatgtttttgaaca
aaacttcaatgctttaatattttatgtccgtttcatattttccaactttgtatttcctgt
tttaagcttaaaccttcatttccaaacgtctcaatgtaattctcacaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATAGCCCCTATTTTGCTCTCAA 441 363 20 Antisense
TTTGCTCTCAAAAACTACTCACTAT 88 667 34 Antisense
AACTACTCACTATTACGTCTCAAGG 151 141 46 Antisense
ACGTCTCAAGGATCAACCGTTGCGT 583 91 60 Antisense
CAACCGTTGCGTGTGCATTTTTCGT 524 187 73 Antisense
TTTTTTTTCTCTTTGACTAGAACTG 90 675 125 Antisense
GACTAGAACTGTTTCTTTTGGATGG 339 371 139 Antisense
GCTTTAATATTTTATGTCCGTTTCA 11 303 210 Antisense
GTCCGTTTCATATTTTCCAACTTTG 621 475 225 Antisense
TAAACCTTCATTTCCAAACGTCTCA 116 641 268 Antisense
AACGTCTCAATGTAATTCTCACAAC 173 145 284 Antisense
Sequence Source Affymetrix Proprietary Database