[Home] | [Total List]

[175271_s_at] oxidoreductase

Description AU116228_rc /REP_DB=TREMBL Accession /GB=AU116228 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk742b6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 62      4grp_high_8_8 > 58      6grp_highest_nonorm > 52      6grp_total > 62      4grp_total > 61      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 371
1 2 3 4 range
A 557.7
(3)
P 		380.8
(0.1)
P 		443.4
(1.1)
P 		187.2
(-3)
M 		371
B 426.4
(3)
P 		418.7
(2.8)
P 		415.3
(2.7)
P 		229.1
(-3)
P 		197
C 502.3
(3)
P 		412.3
(1.1)
P 		483.7
(2.6)
P 		215.4
(-3)
P 		287
avr 495.5
(3) 		403.9
(1.1) 		447.5
(2) 		210.6
(-3) 		285

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 689
1 2 3 4 5 6 range
A 544.2
(-3)
P 		685.7
(-1.7)
P 		1182.6
(3)
P 		1003.8
(1.3)
P 		554.7
(-2.9)
P 		577.2
(-2.7)
P 		638
B 520.8
(-3)
P 		607
(-1.2)
P 		802.4
(3)
P 		774
(2.4)
P 		663.6
(0)
P 		530.9
(-2.8)
P 		282
C 771.9
(2.3)
P 		619.6
(-0.6)
P 		807.5
(3)
P 		784.3
(2.6)
P 		701.1
(1)
P 		493.8
(-3)
P 		314
avr 612.3
(-1.8) 		637.4
(-1.4) 		930.8
(3) 		854
(1.8) 		639.8
(-1.4) 		534
(-3) 		397
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 203.1
(3)
P 		82.7
(-1.1)
P 		115.9
(0)
P 		27.4
(-3)
M 		176
B 136
(3)
P 		103.4
(0.8)
P 		96.2
(0.3)
P 		48.8
(-3)
P 		87
C 166.3
(2.9)
P 		118.5
(0.7)
P 		168.6
(3)
P 		36.3
(-3)
P 		132
avr 168.5
(3) 		101.5
(-0.1) 		126.9
(1.1) 		37.5
(-3) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 186
1 2 3 4 5 6 range
A 100.3
(-3)
P 		243.9
(2.5)
P 		257.5
(3)
P 		254.6
(2.9)
P 		167.4
(-0.4)
P 		140.5
(-1.5)
P 		157
B 181.2
(-3)
P 		202
(-1.6)
P 		194.8
(-2.1)
P 		205
(-1.4)
P 		269.6
(3)
P 		198
(-1.9)
P 		88
C 286.1
(3)
P 		189.1
(-1.5)
P 		205.5
(-0.8)
P 		157.7
(-3)
P 		226.9
(0.2)
P 		165.3
(-2.6)
P 		128
avr 189.2
(-0.6) 		211.7
(1.9) 		219.3
(2.8) 		205.8
(1.3) 		221.3
(3) 		167.9
(-3) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175271_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21696
Sequence Type Exemplar sequence
Representative Public ID AU116228 NCBI
Target Description AU116228_rc /REP_DB=TREMBL Accession /GB=AU116228 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk742b6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072711(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072711 NCBI Caenorhabditis elegans F20D6.11 (oxidoreductase) mRNA, complete cds. 11/11 A 
F20D6.11.1 ENSEMBL cdna:known chromosome:CEL140:V:8199376:8201685:-1 gene:F20D6.11 11/11 A 
F20D6.11.2 ENSEMBL cdna:known chromosome:CEL140:V:8199402:8201680:-1 gene:F20D6.11 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021023 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8199523-8199942(-) 100.0 100.0
Public Domain and Genome References
Gene Title oxidoreductase
Ensembl F20D6.11
Entrez Gene 179196 Entrez gene
SwissProt Q19655 EMBL-EBI
WormBase CE27373 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.23332.1.S1_S_AT similar to apoptosis-inducing factor like isoform 1 cfa
DROSOPHILA_2:1641370_S_AT dm
DROSGENOME1:143005_AT dm
CHICKEN:GGA.18742.1.S1_AT similar to Nfrl gga
CHICKEN:GGA.18742.1.S1_X_AT similar to Nfrl gga
CHICKEN:GGAAFFX.22341.1.S1_AT similar to Nfrl gga
CHICKEN:GGAAFFX.4807.1.S1_S_AT similar to Nfrl gga
U133_X3P:HS.163543.0.A1_3P_AT apoptosis-inducing factor like hs
HG-U133_PLUS_2:244084_AT apoptosis-inducing factor like hs
HG-U133B:244084_AT apoptosis-inducing factor like hs
HG-U95E:84071_AT apoptosis-inducing factor like hs
MG-U74CV2:165745_AT RIKEN cDNA 2810401C16 gene mm
MG-U74CV2:170799_AT RIKEN cDNA 2810401C16 gene mm
MOE430B:1431923_AT RIKEN cDNA 2810401C16 gene mm
MOUSE430_2:1431923_AT RIKEN cDNA 2810401C16 gene mm
MOE430B:1434742_S_AT RIKEN cDNA 2810401C16 gene mm
MOUSE430_2:1434742_S_AT RIKEN cDNA 2810401C16 gene mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
15036 disulfide oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37054 Hypothetical protein F20D6.11 [Caenorhabditis elegans] ref|NP_505112.1| F20D6.11 [Caenorhabditis elegans] 0.0
blast CAE66107 Hypothetical protein CBG11327 [Caenorhabditis briggsae] 0.0
blast XP_697637 PREDICTED: similar to apoptosis-inducing factor like isoform 1 [Danio rerio] 1.0E-86
Protein Domains
Database ID Description E-Value
Pfam IPR005806 EMBL-EBI Rieske [2Fe-2S] domain 4.5E-15
Pfam IPR001327 EMBL-EBI FAD-dependent pyridine nucleotide-disulphide oxidoreductase 2.3E-74
Sequence
Target Sequence 
>C. ELEGANS:175271_S_AT
gaaaacctcaacctggacctattgttccatacttttggactctgtttttctttgcgtttg
gtttgaagttctcaggatgcaatcaaggatccacaaaggaatacactaatggagatcctg
aaactggaactttcattcgatacttcttgaaaaaagacaaagtcgtagctgtagctgctg
gtggtccatccagtgttgcctcccagttcgctgaaattttcaaaaaaggaatcgaagtca
ctctgaagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAACCTCAACCTGGACCTATTGT 88 355 23 Antisense
GACCTATTGTTCCATACTTTTGGAC 491 383 38 Antisense
TTTTGGACTCTGTTTTTCTTTGCGT 71 679 55 Antisense
TTTGCGTTTGGTTTGAAGTTCTCAG 395 667 73 Antisense
GAAGTTCTCAGGATGCAATCAAGGA 118 337 87 Antisense
TGGAGATCCTGAAACTGGAACTTTC 206 549 132 Antisense
GGAACTTTCATTCGATACTTCTTGA 527 529 148 Antisense
GTCGTAGCTGTAGCTGCTGGTGGTC 555 473 184 Antisense
TGCTGGTGGTCCATCCAGTGTTGCC 283 583 198 Antisense
GCCTCCCAGTTCGCTGAAATTTTCA 96 283 220 Antisense
AAGGAATCGAAGTCACTCTGAAGGA 457 161 248 Antisense
Sequence Source Affymetrix Proprietary Database