[Home] | [Total List]

[175269_at] zinc finger protein (GATA type)

Description AV200322_rc /REP_DB=TREMBL Accession /GB=AV200322 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk560e8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 49      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 91      6grp_total > 39      4grp_total > 05      6grp_highest_sub > Cu      6grp_cgc > 09      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 402
1 2 3 4 range
A 316.1
(-2.1)
P 		268.3
(-3)
P 		273.2
(-2.9)
P 		581.6
(3)
P 		313
B 442.5
(1.7)
P 		189.3
(-2.8)
P 		179.9
(-3)
P 		518
(3)
P 		338
C 272.9
(-1.7)
P 		264.8
(-1.9)
P 		209.4
(-3)
P 		513.8
(3)
P 		304
avr 343.8
(-0.7) 		240.8
(-2.6) 		220.8
(-3) 		537.8
(3) 		317

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 199
1 2 3 4 5 6 range
A 327.3
(3)
P 		128.4
(-3)
P 		193
(-1.1)
P 		149
(-2.4)
P 		213.4
(-0.4)
P 		210.6
(-0.5)
P 		199
B 216.7
(0.7)
P 		231.6
(1.3)
P 		135.5
(-3)
P 		224.2
(1)
P 		242.4
(1.8)
P 		268.5
(3)
P 		133
C 215.3
(1.1)
P 		225.4
(1.7)
P 		143.2
(-3)
P 		247.8
(3)
P 		226.4
(1.8)
P 		217.4
(1.3)
P 		105
avr 253.1
(3) 		195.1
(-0.6) 		157.2
(-3) 		207
(0.1) 		227.4
(1.4) 		232.2
(1.7) 		96
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 115.1
(3)
P 		58.2
(-3)
P 		71.4
(-1.6)
P 		85.1
(-0.2)
P 		57
B 141.1
(3)
P 		46.7
(-2.7)
P 		41.7
(-3)
P 		110.4
(1.1)
P 		99
C 90.3
(3)
P 		76.1
(-1.9)
P 		73
(-3)
P 		86.6
(1.7)
P 		17
avr 115.5
(3) 		60.3
(-3) 		62
(-2.8) 		94
(0.7) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 60.3
(2.1)
P 		45.7
(-1.2)
P 		42
(-2.1)
P 		37.8
(-3)
P 		64.4
(3)
P 		51.3
(0)
P 		27
B 75.4
(0.8)
P 		77.1
(0.9)
P 		32.9
(-3)
P 		59.4
(-0.6)
P 		98.5
(2.9)
P 		100.1
(3)
P 		67
C 79.8
(3)
P 		68.8
(1.5)
P 		36.4
(-3)
P 		49.8
(-1.1)
P 		73.3
(2.1)
P 		72.8
(2)
P 		43
avr 71.8
(2) 		63.9
(0.9) 		37.1
(-3) 		49
(-1.3) 		78.7
(3) 		74.7
(2.4) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175269_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22211
Sequence Type Exemplar sequence
Representative Public ID AV200322 NCBI
Target Description AV200322_rc /REP_DB=TREMBL Accession /GB=AV200322 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk560e8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077354(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077354 NCBI Caenorhabditis elegans Erythroid-Like Transcription factor family member (elt-2) (elt-2) mRNA, complete cds. 11/11 None
C33D3.1 ENSEMBL cdna:known chromosome:CEL140:X:10481168:10483356:1 gene:C33D3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10482857-10483346(+) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein (GATA type)
Gene Symbol elt-2
Ensembl C33D3.1
Entrez Gene 181250 Entrez gene
SwissProt Q10655 EMBL-EBI
WormBase CE31430 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
45944 positive regulation of transcription from RNA polymerase II promoter inferred from direct assay QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from direct assay QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3705 RNA polymerase II transcription factor activity, enhancer binding inferred from direct assay QuickGO AmiGO
3690 double-stranded DNA binding inferred from direct assay QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90029 Hypothetical protein C33D3.1 [Caenorhabditis elegans] ref|NP_509755.2| Erythroid-Like Transcription factor family member (elt-2) [Caenorhabditis elegans] sp|Q10655|ELT2_CAEEL Transcription factor elt-2 gb|AAC36130.1| GATA-factor [Caenorhabditis elegans] 0.0
blast T19677 hypothetical protein C33D3.1 - Caenorhabditis elegans 0.0
blast CAE70591 Hypothetical protein CBG17257 [Caenorhabditis briggsae] 1.0E-120
Protein Domains
Database ID Description E-Value
Pfam IPR000679 EMBL-EBI Zn-finger, GATA type 1.6E-19
Sequence
Target Sequence 
>C. ELEGANS:175269_AT
tagaaatattgctcagctcttccaaagttgtccattttaatgcatagttttgtattctca
aaaaaaaaaccatatttgtattatttatcatactgattgcaataactgcctttttaaagt
gttttcaaagtgttcatccatacttgtatagtttcaaaatgttttaaatattttttctct
aaatactaactctaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGAAATATTGCTCAGCTCTTCCAA 281 653 116 Antisense
TGCTCAGCTCTTCCAAAGTTGTCCA 670 579 125 Antisense
AGCTCTTCCAAAGTTGTCCATTTTA 98 79 130 Antisense
AAGTTGTCCATTTTAATGCATAGTT 48 157 140 Antisense
TTAATGCATAGTTTTGTATTCTCAA 556 683 152 Antisense
AAACCATATTTGTATTATTTATCAT 653 125 182 Antisense
TATCATACTGATTGCAATAACTGCC 88 659 201 Antisense
TTGCAATAACTGCCTTTTTAAAGTG 80 705 212 Antisense
GTGTTTTCAAAGTGTTCATCCATAC 372 485 234 Antisense
GTTCATCCATACTTGTATAGTTTCA 260 445 247 Antisense
TTTTTCTCTAAATACTAACTCTAAT 257 659 287 Antisense
Sequence Source Affymetrix Proprietary Database