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[175268_at] esterase

Description AU113180_rc /REP_DB=TREMBL Accession /GB=AU113180 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk704a2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 99      4grp_highest_8_8 > 03      4grp_high_8_8 > 46      6grp_highest_nonorm > 91      6grp_total > 98      4grp_total > 41      6grp_highest_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 237
1 2 3 4 range
A 79.7
(-3)
P 		225.7
(2)
P 		253.4
(3)
P 		192.6
(0.9)
P 		174
B 76.1
(-3)
P 		278.3
(3)
P 		209.8
(1)
P 		106.2
(-2.1)
P 		202
C 72.5
(-3)
P 		309.3
(3)
P 		230.3
(1)
P 		93
(-2.5)
P 		237
avr 76.1
(-3) 		271.1
(3) 		231.2
(1.8) 		130.6
(-1.3) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 379
1 2 3 4 5 6 range
A 114
(-3)
P 		159.6
(-1.9)
P 		132.2
(-2.6)
P 		178.5
(-1.4)
P 		358.4
(3)
P 		269.4
(0.8)
P 		244
B 169.5
(-2)
P 		108.7
(-3)
P 		107.7
(-3)
P 		143.6
(-2.4)
P 		241.6
(-0.9)
P 		486.4
(3)
P 		379
C 117.3
(-3)
P 		224
(-0.2)
P 		126.1
(-2.8)
P 		198.9
(-0.9)
P 		348.4
(3)
P 		301.1
(1.8)
P 		231
avr 133.6
(-2.7) 		164.1
(-1.9) 		122
(-3) 		173.7
(-1.7) 		316.1
(2.1) 		352.3
(3) 		230
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 29
(-2.9)
P 		49
(0.3)
P 		66.2
(3)
P 		28.2
(-3)
P 		38
B 24.3
(-2.8)
P 		68.7
(3)
P 		48.6
(0.4)
P 		22.6
(-3)
P 		46
C 24
(-2.3)
P 		88.9
(3)
P 		80.3
(2.3)
P 		15.7
(-3)
P 		73
avr 25.8
(-2.5) 		68.9
(3) 		65
(2.5) 		22.2
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 21
(-3)
P 		56.8
(-0.5)
P 		28.8
(-2.5)
P 		45.3
(-1.3)
P 		108.2
(3)
P 		65.6
(0.1)
P 		87
B 59
(-1.7)
P 		36.2
(-2.6)
P 		26.2
(-3)
P 		38
(-2.5)
P 		98.2
(-0.2)
P 		181.4
(3)
P 		155
C 43.5
(-2.2)
P 		68.3
(-0.3)
P 		32.1
(-3)
P 		40
(-2.4)
P 		112.8
(3)
P 		100.8
(2.1)
P 		81
avr 41.2
(-2.2) 		53.8
(-1.3) 		29
(-3) 		41.1
(-2.2) 		106.4
(2.3) 		115.9
(3) 		87
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175268_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22214
Sequence Type Exemplar sequence
Representative Public ID AU113180 NCBI
Target Description AU113180_rc /REP_DB=TREMBL Accession /GB=AU113180 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk704a2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029728(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029728 NCBI Caenorhabditis elegans T09B9.1 (esterase) mRNA, complete cds. 11/11 None
T09B9.1 ENSEMBL cdna:known chromosome:CEL140:X:9757202:9759167:1 gene:T09B9.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000011003 4/11 Cross Hyb Matching Probes None
SNAP00000010997 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9758873-9759157(+) 100.0 100.0
Public Domain and Genome References
Gene Title esterase
Ensembl T09B9.1
Entrez Gene 181188 Entrez gene
SwissProt Q7JMM5 EMBL-EBI
WormBase CE36409 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.25077.1.S1_AT similar to arylacetamide deacetylase cfa
Protein Similarities
Method ID Description E-Value
blast CAF31494 Hypothetical protein T09B9.1 [Caenorhabditis elegans] ref|NP_001024899.1| T09B9.1 [Caenorhabditis elegans] 0.0
blast CAE69740 Hypothetical protein CBG16012 [Caenorhabditis briggsae] 0.0
blast CAA92464 Hypothetical protein F27C8.6 [Caenorhabditis elegans] ref|NP_501702.1| F27C8.6 [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024899.1 1 12-31
T09B9.1 1 12-31
Sequence
Target Sequence 
>C. ELEGANS:175268_AT
cacagtgaactcaatgaagcatccaatgccgtttacgatattgaacgatggactttaaac
gccatccataccgtccgtcactaacaaatagtgttctttttcattaggaacagttttaat
agatcctttattgtttttgaaacccgtatttattatcgcagcccgttttgtttctgtgat
tcctattctcctttcattgttgtgaatttttacggttgtacgcatttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACAGTGAACTCAATGAAGCATCCA 279 183 23 Antisense
AAGCATCCAATGCCGTTTACGATAT 292 151 39 Antisense
TTACGATATTGAACGATGGACTTTA 35 559 55 Antisense
GACTTTAAACGCCATCCATACCGTC 118 371 73 Antisense
CATACCGTCCGTCACTAACAAATAG 9 211 89 Antisense
CAAATAGTGTTCTTTTTCATTAGGA 51 193 107 Antisense
TAATAGATCCTTTATTGTTTTTGAA 233 627 139 Antisense
AACCCGTATTTATTATCGCAGCCCG 171 147 163 Antisense
TTATTATCGCAGCCCGTTTTGTTTC 567 679 172 Antisense
TCCTATTCTCCTTTCATTGTTGTGA 48 593 203 Antisense
GAATTTTTACGGTTGTACGCATTTG 615 323 226 Antisense
Sequence Source Affymetrix Proprietary Database