[Home] | [Total List]

[175267_at]

Description AV200186_rc /REP_DB=TREMBL Accession /GB=AV200186 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk558a7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 37      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 0      6grp_total > 35      4grp_total > 47      6grp_highest_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1175
1 2 3 4 range
A 1915.5
(3)
P 		1118
(-1.5)
P 		861.2
(-3)
P 		904.3
(-2.8)
P 		1054
B 2036.4
(3)
P 		980.4
(-2.7)
P 		923.8
(-3)
P 		1033.9
(-2.4)
P 		1113
C 1847.8
(3)
P 		1066.6
(-1.8)
P 		872.7
(-3)
P 		1020.2
(-2.1)
P 		975
avr 1933.2
(3) 		1055
(-2) 		885.9
(-3) 		986.1
(-2.4) 		1047

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1799
1 2 3 4 5 6 range
A 2101.1
(2.9)
P 		1768.8
(1.3)
P 		2116.7
(3)
P 		1352.5
(-0.8)
P 		916.9
(-3)
P 		1652.1
(0.7)
P 		1200
B 2611.9
(3)
P 		1949.4
(0.7)
P 		2039.4
(1)
P 		1073.6
(-2.4)
P 		894
(-3)
P 		1797.9
(0.2)
P 		1718
C 2465.5
(3)
P 		1821.1
(0.7)
P 		1391.5
(-0.9)
P 		1438.6
(-0.7)
P 		813.2
(-3)
P 		2005.6
(1.3)
P 		1652
avr 2392.8
(3) 		1846.4
(0.8) 		1849.2
(0.9) 		1288.2
(-1.4) 		874.7
(-3) 		1818.5
(0.7) 		1518
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 565
1 2 3 4 range
A 697.4
(3)
P 		242.7
(-1.8)
P 		225.1
(-2)
P 		132.4
(-3)
P 		565
B 649.4
(3)
P 		242.1
(-2.6)
P 		214.1
(-3)
P 		220.3
(-2.9)
P 		435
C 611.7
(3)
P 		306.7
(-1.2)
P 		304.2
(-1.2)
P 		172
(-3)
P 		440
avr 652.8
(3) 		263.8
(-1.9) 		247.8
(-2.1) 		174.9
(-3) 		478

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 651
1 2 3 4 5 6 range
A 387.3
(-1.1)
P 		629.1
(3)
P 		461
(0.1)
P 		343
(-1.9)
P 		276.7
(-3)
P 		402.2
(-0.9)
P 		352
B 908.8
(3)
P 		648.9
(0.5)
P 		495.2
(-1)
P 		284.4
(-3)
P 		363.2
(-2.2)
P 		670.4
(0.7)
P 		624
C 913.9
(3)
P 		555.7
(-0.3)
P 		354.2
(-2.2)
P 		289.3
(-2.8)
P 		263.1
(-3)
P 		671.4
(0.8)
P 		651
avr 736.7
(3) 		611.2
(1.3) 		436.8
(-1.1) 		305.6
(-2.9) 		301
(-3) 		581.3
(0.9) 		436
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175267_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22063
Sequence Type Exemplar sequence
Representative Public ID AV200186 NCBI
Target Description AV200186_rc /REP_DB=TREMBL Accession /GB=AV200186 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk558a7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076621(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076621 NCBI Caenorhabditis elegans C15H9.11 (C15H9.11) mRNA, complete cds. 11/11 None
SNAP00000042802 ENSEMBL cdna:SNAP chromosome:CEL140:X:6102891:6103346:-1 11/11 None
GENEFINDER00000042814 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6102891:6103346:-1 11/11 None
C15H9.11 ENSEMBL cdna:known chromosome:CEL140:X:6102839:6103390:-1 gene:C15H9.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6102916-6103295(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C15H9.11
Entrez Gene 180882 Entrez gene
SwissProt Q95QW3 EMBL-EBI
WormBase CE27686 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84491 Hypothetical protein C15H9.11 [Caenorhabditis elegans] ref|NP_509022.1| C15H9.11 [Caenorhabditis elegans] 2.0E-55
blast CAE68869 Hypothetical protein CBG14832 [Caenorhabditis briggsae] 3.0E-24
Sequence
Target Sequence 
>C. ELEGANS:175267_AT
aaatgtcctcagacggacctttcaactaatacggcttacagcgactgttccgccaacaac
tattgtactacaattattgagtttaattccgacggcaccttcaaagacgagaaaaaagga
tgcgacaatgcgaactgccaaggcaccggacgattcagctcggttaaccaatatgcaatt
ggtggacctactgctacattttacaattgctgtactggagaacattgcaatagtgcgacc
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGTCCTCAGACGGACCTTTCAA 18 121 22 Antisense
GACGGACCTTTCAACTAATACGGCT 485 313 33 Antisense
AATACGGCTTACAGCGACTGTTCCG 171 171 49 Antisense
GACTGTTCCGCCAACAACTATTGTA 230 375 64 Antisense
ATTGAGTTTAATTCCGACGGCACCT 427 3 97 Antisense
CCGACGGCACCTTCAAAGACGAGAA 586 263 110 Antisense
AAGGATGCGACAATGCGAACTGCCA 613 159 137 Antisense
GAACTGCCAAGGCACCGGACGATTC 530 305 153 Antisense
CGGACGATTCAGCTCGGTTAACCAA 310 241 168 Antisense
ATTGGTGGACCTACTGCTACATTTT 659 3 199 Antisense
GGAGAACATTGCAATAGTGCGACCA 342 519 238 Antisense
Sequence Source Affymetrix Proprietary Database