[Home] | [Total List]

[175266_s_at]

Description AV177856_rc /REP_DB=TREMBL Accession /GB=AV177856 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk534g9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 76      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 83      6grp_total > 67      4grp_total > 31      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 314
1 2 3 4 range
A 488.9
(3)
P 		174.8
(-3)
P 		192.8
(-2.7)
P 		258.9
(-1.4)
P 		314
B 448
(3)
P 		305.9
(-0.5)
P 		203
(-3)
P 		328.1
(0.1)
P 		245
C 420
(3)
P 		236.1
(-3)
P 		264
(-2.1)
P 		411.1
(2.7)
P 		184
avr 452.3
(3) 		238.9
(-2.5) 		219.9
(-3) 		332.7
(-0.1) 		232

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 419
1 2 3 4 5 6 range
A 382.2
(-2.5)
P 		360.2
(-3)
P 		608.2
(3)
P 		408.1
(-1.8)
P 		408
(-1.8)
P 		579.7
(2.3)
P 		248
B 556.7
(1.6)
P 		400.8
(-1.6)
P 		539.5
(1.2)
P 		332.5
(-3)
P 		512.3
(0.7)
P 		625.7
(3)
P 		293
C 424.9
(-1.8)
P 		436.9
(-1.6)
P 		345.3
(-3)
P 		361.3
(-2.8)
P 		434.7
(-1.7)
P 		751.8
(3)
P 		407
avr 454.6
(-1.2) 		399.3
(-2.3) 		497.7
(-0.3) 		367.3
(-3) 		451.7
(-1.2) 		652.4
(3) 		285
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 178
(3)
P 		38
(-3)
P 		50.4
(-2.5)
P 		37.9
(-3)
P 		140
B 142.9
(3)
P 		75.6
(-1.2)
P 		47
(-3)
P 		69.9
(-1.6)
P 		96
C 139
(3)
P 		67.9
(-3)
P 		92
(-1)
P 		69.3
(-2.9)
P 		71
avr 153.3
(3) 		60.5
(-2.9) 		63.1
(-2.7) 		59
(-3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 181
1 2 3 4 5 6 range
A 70.5
(-3)
P 		128.1
(1.9)
P 		132.5
(2.3)
P 		103.5
(-0.2)
P 		123.1
(1.5)
P 		141.1
(3)
P 		71
B 193.7
(1.4)
P 		133.4
(-1.1)
P 		131
(-1.2)
P 		88.1
(-3)
P 		208.1
(2)
P 		233.3
(3)
P 		145
C 157.5
(-0.2)
P 		133.3
(-1)
P 		87.9
(-2.5)
P 		72.6
(-3)
P 		140.6
(-0.7)
P 		251.7
(3)
P 		179
avr 140.6
(-0.4) 		131.6
(-0.8) 		117.1
(-1.6) 		88.1
(-3) 		157.3
(0.4) 		208.7
(3) 		121
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175266_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21721
Sequence Type Exemplar sequence
Representative Public ID AV177856 NCBI
Target Description AV177856_rc /REP_DB=TREMBL Accession /GB=AV177856 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk534g9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072439(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072439 NCBI Caenorhabditis elegans C05C8.9a (C05C8.9) mRNA, complete cds. 11/11 None
SNAP00000024626 ENSEMBL cdna:SNAP chromosome:CEL140:V:7240151:7242152:1 11/11 None
GENEFINDER00000024637 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7240151:7242152:1 11/11 None
C05C8.9a ENSEMBL cdna:known chromosome:CEL140:V:7240151:7242222:1 gene:C05C8.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179118 2 1 NM_072439 175266_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7241015-7242174(+) 100.0 100.0
Public Domain and Genome References
Ensembl C05C8.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK95869 Hypothetical protein C05C8.9a [Caenorhabditis elegans] ref|NP_504840.1| C05C8.9a [Caenorhabditis elegans] 1.0E-159
blast T31746 hypothetical protein C05C8.1 - Caenorhabditis elegans 1.0E-136
blast CAE72030 Hypothetical protein CBG19112 [Caenorhabditis briggsae] 1.0E-89
Sequence
Target Sequence 
>C. ELEGANS:175266_S_AT
gaagtttggactcggaatgtgttgtcacttgaaccaggaagagcaccaaaaaaatatgat
ccggtcacaagatatcatttctacaaatctgaatgggatcgtcatccggctccaggtgaa
atgcgtcgtttatcacttcgttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTTTGGACTCGGAATGTGTTGT 587 335 17 Antisense
GGACTCGGAATGTGTTGTCACTTGA 270 525 24 Antisense
GAATGTGTTGTCACTTGAACCAGGA 298 333 31 Antisense
GTTGTCACTTGAACCAGGAAGAGCA 710 437 37 Antisense
AAAAAATATGATCCGGTCACAAGAT 158 131 65 Antisense
GATCCGGTCACAAGATATCATTTCT 319 417 74 Antisense
AGATATCATTTCTACAAATCTGAAT 17 67 86 Antisense
TCTGAATGGGATCGTCATCCGGCTC 197 607 104 Antisense
TCATCCGGCTCCAGGTGAAATGCGT 609 619 118 Antisense
TCCGGCTCCAGGTGAAATGCGTCGT 354 593 121 Antisense
AATGCGTCGTTTATCACTTCGTTGG 435 165 136 Antisense
Sequence Source Affymetrix Proprietary Database