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[175265_at]

Description AV177700_rc /REP_DB=TREMBL Accession /GB=AV177700 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk532d4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 06      4grp_highest_8_8 > 59      4grp_high_8_8 > 33      6grp_highest_nonorm > 30      6grp_total > 07      4grp_total > 47      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1357
1 2 3 4 range
A 1475
(3)
P 		400.8
(-1.9)
P 		149.6
(-3)
P 		296.9
(-2.3)
P 		1325
B 1122.1
(3)
P 		372.7
(-1.5)
P 		127
(-3)
P 		400.1
(-1.4)
P 		995
C 1484.4
(3)
P 		359.4
(-2.3)
P 		207.7
(-3)
P 		349.8
(-2.3)
P 		1277
avr 1360.5
(3) 		377.6
(-1.9) 		161.4
(-3) 		348.9
(-2.1) 		1199

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1280
1 2 3 4 5 6 range
A 1363.4
(3)
P 		887.8
(0.2)
P 		628.7
(-1.4)
P 		432.5
(-2.5)
P 		476.5
(-2.3)
P 		357
(-3)
P 		1006
B 1637.3
(3)
P 		854.7
(-0.8)
P 		911.5
(-0.5)
P 		673.8
(-1.7)
P 		407.5
(-3)
P 		608.6
(-2)
P 		1230
C 1483.3
(3)
P 		1143.6
(1.1)
P 		667.9
(-1.5)
P 		674.5
(-1.4)
P 		387.2
(-3)
P 		526.3
(-2.2)
P 		1096
avr 1494.7
(3) 		962
(0) 		736
(-1.3) 		593.6
(-2) 		423.7
(-3) 		497.3
(-2.6) 		1071
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 508
1 2 3 4 range
A 537.1
(3)
P 		87
(-2.4)
P 		39.1
(-3)
P 		43.5
(-2.9)
P 		498
B 357.8
(3)
P 		92
(-1.9)
P 		29.4
(-3)
P 		85.3
(-2)
P 		328
C 491.4
(3)
P 		103.3
(-2.4)
P 		72.4
(-2.8)
P 		59
(-3)
P 		432
avr 462.1
(3) 		94.1
(-2.3) 		47
(-3) 		62.6
(-2.8) 		415

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 483
1 2 3 4 5 6 range
A 251.3
(1.3)
P 		315.7
(3)
P 		136.9
(-1.7)
P 		109.7
(-2.4)
P 		143.8
(-1.5)
P 		86.9
(-3)
P 		229
B 569.7
(3)
P 		284.5
(-1.2)
P 		221.3
(-2.2)
P 		178.5
(-2.8)
P 		165.5
(-3)
P 		226.9
(-2.1)
P 		404
C 549.8
(3)
P 		349
(0.2)
P 		170
(-2.4)
P 		135.6
(-2.9)
P 		125.3
(-3)
P 		176.2
(-2.3)
P 		425
avr 456.9
(3) 		316.4
(0.3) 		176.1
(-2.3) 		141.3
(-3) 		144.9
(-2.9) 		163.3
(-2.6) 		316
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175265_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21281
Sequence Type Exemplar sequence
Representative Public ID AV177700 NCBI
Target Description AV177700_rc /REP_DB=TREMBL Accession /GB=AV177700 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk532d4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F20C5.6 ENSEMBL cdna:known chromosome:CEL140:IV:8771539:8773186:-1 gene:F20C5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8771620-8771912(-) 100.0 100.0
Public Domain and Genome References
Ensembl F20C5.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92300 Hypothetical protein F20C5.6 [Caenorhabditis elegans] emb|CAA92289.1| Hypothetical protein F20C5.6 [Caenorhabditis elegans] ref|NP_501513.1| F20C5.6 [Caenorhabditis elegans] 0.0
blast XP_687637 PREDICTED: similar to Golgi autoantigen, golgin subfamily A member 4 (Trans-Golgi p230) (256 kDa golgin) (Golgin-245) (72.1 protein) [Danio rerio] 2.0E-14
blast S06117 myosin heavy chain, nonmuscle (clone lambda-FMHC) - chicken (fragment) 4.0E-13
Sequence
Target Sequence 
>C. ELEGANS:175265_AT
agtagctctttaatcgtattaccttaagccttcaacaaaaaattatttttaaaaaacaat
tgtattcttgtaaactttgtaccttttctgtactgcactgtattataaacttcatatgtt
tcccgtacttttgcgtgactctgtcattgtttatactaatgtgaaaacattttacttatt
actatttcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTAGCTCTTTAATCGTATTACCTT 50 63 81 Antisense
ATCGTATTACCTTAAGCCTTCAACA 528 35 93 Antisense
TGTATTCTTGTAAACTTTGTACCTT 288 561 141 Antisense
ACTTTGTACCTTTTCTGTACTGCAC 446 101 154 Antisense
TACCTTTTCTGTACTGCACTGTATT 701 649 160 Antisense
ACTGCACTGTATTATAAACTTCATA 192 97 172 Antisense
ACTTCATATGTTTCCCGTACTTTTG 329 103 189 Antisense
CATATGTTTCCCGTACTTTTGCGTG 126 215 193 Antisense
GTACTTTTGCGTGACTCTGTCATTG 149 461 205 Antisense
GTGACTCTGTCATTGTTTATACTAA 278 483 215 Antisense
ACATTTTACTTATTACTATTTCACA 649 103 247 Antisense
Sequence Source Affymetrix Proprietary Database