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[175264_at]

Description AU113052_rc /REP_DB=TREMBL Accession /GB=AU113052 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk702b5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 80      4grp_highest_8_8 > 08      4grp_high_8_8 > 53      6grp_highest_nonorm > 63      6grp_total > 82      4grp_total > 51      6grp_highest_sub > 04_05      6grp_high1_sub > 02_03_04_05      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 340
1 2 3 4 range
A 492.2
(-1.3)
P 		703.3
(3)
P 		640.2
(1.7)
P 		407.1
(-3)
P 		296
B 506.3
(0.7)
P 		596.8
(3)
P 		516.6
(0.9)
P 		363.5
(-3)
P 		233
C 515.8
(0)
P 		586
(2.4)
P 		602.2
(3)
P 		428.1
(-3)
P 		174
avr 504.8
(-0.2) 		628.7
(3) 		586.3
(1.9) 		399.6
(-3) 		229

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 578
1 2 3 4 5 6 range
A 499.1
(-1.4)
P 		665.5
(0.6)
P 		551.3
(-0.8)
P 		862.9
(2.9)
P 		872.9
(3)
P 		364.1
(-3)
P 		509
B 516.7
(-2)
P 		749.3
(1.8)
P 		630.9
(-0.1)
P 		763.7
(2)
P 		823.7
(3)
P 		452.9
(-3)
P 		371
C 457.6
(-2.4)
P 		679.7
(0.1)
P 		540.4
(-1.4)
P 		942
(3)
P 		776.6
(1.2)
P 		398.8
(-3)
P 		543
avr 491.1
(-1.9) 		698.2
(0.9) 		574.2
(-0.8) 		856.2
(3) 		824.4
(2.6) 		405.3
(-3) 		451
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 179.2
(3)
P 		152.7
(1.7)
P 		167.4
(2.4)
P 		59.6
(-3)
P 		120
B 161.4
(3)
P 		147.4
(2)
P 		119.7
(0)
P 		77.5
(-3)
P 		84
C 170.7
(1.3)
P 		168.5
(1.2)
P 		209.9
(3)
P 		72.2
(-3)
P 		138
avr 170.4
(3) 		156.2
(2.2) 		165.7
(2.7) 		69.8
(-3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 246
1 2 3 4 5 6 range
A 92
(-2.9)
P 		236.7
(2.1)
P 		120.1
(-1.9)
P 		218.9
(1.5)
P 		263.4
(3)
P 		88.7
(-3)
P 		175
B 179.8
(-2.1)
P 		249.4
(0.2)
P 		153.2
(-3)
P 		202.3
(-1.4)
P 		334.7
(3)
P 		168.9
(-2.5)
P 		182
C 169.6
(-1.2)
P 		207.4
(0.8)
P 		137.5
(-2.8)
P 		189.4
(-0.2)
P 		251.3
(3)
P 		133.5
(-3)
P 		118
avr 147.1
(-2.3) 		231.2
(1) 		136.9
(-2.7) 		203.5
(-0.1) 		283.1
(3) 		130.4
(-3) 		153
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175264_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21088
Sequence Type Exemplar sequence
Representative Public ID AU113052 NCBI
Target Description AU113052_rc /REP_DB=TREMBL Accession /GB=AU113052 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk702b5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065923(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065923 NCBI Caenorhabditis elegans C05D10.4b (C05D10.4) mRNA, complete cds. 11/11 A 
C05D10.4b ENSEMBL cdna:known chromosome:CEL140:III:6088626:6102681:-1 gene:C05D10.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_065922 8/11 Cross Hyb Matching Probes A 
NM_171149 8/11 Cross Hyb Matching Probes A 
SNAP00000011487 8/11 Cross Hyb Matching Probes None
GENEFINDER00000011502 8/11 Cross Hyb Matching Probes None
C05D10.4c 8/11 Cross Hyb Matching Probes A 
C05D10.4a 8/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175860 3 1 NM_065922 176149_at (11)
NM_065923 175264_at (11), 176149_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6088702-6089034(-) 100.0 100.0
Public Domain and Genome References
Ensembl C05D10.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM15545 Hypothetical protein C05D10.4b [Caenorhabditis elegans] ref|NP_498324.2| C05D10.4b [Caenorhabditis elegans] sp|Q11181|YPC4_CAEEL Hypothetical protein C05D10.4 in chromosome III 0.0
blast AAM15544 Hypothetical protein C05D10.4a [Caenorhabditis elegans] ref|NP_498323.2| C05D10.4a [Caenorhabditis elegans] 0.0
blast AAM15546 Hypothetical protein C05D10.4c [Caenorhabditis elegans] ref|NP_741170.1| C05D10.4c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001660 EMBL-EBI Sterile alpha motif SAM 1.2E-4
Sequence
Target Sequence 
>C. ELEGANS:175264_AT
gatttctgattccaacggagctgcaattcgatttgtggtgctccgaaggaaaactaattt
ggtggttgaagaaagtcagcagaaggagtcatcgagtagtggaatctcatcaagtcctca
aactccaacggaatagttgttatttgttactacatattgatagattgctttacaattctg
ctcttattctttaaatattgtttttttttctcaaaaaccaatattcttcactctcccata
atttgcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTCTGATTCCAACGGAGCTGCA 243 427 14 Antisense
GATTCCAACGGAGCTGCAATTCGAT 255 429 21 Antisense
TGCAATTCGATTTGTGGTGCTCCGA 208 575 35 Antisense
CGATTTGTGGTGCTCCGAAGGAAAA 433 247 42 Antisense
AAGTCAGCAGAAGGAGTCATCGAGT 388 157 86 Antisense
GTCATCGAGTAGTGGAATCTCATCA 83 467 101 Antisense
GAATCTCATCAAGTCCTCAAACTCC 210 329 115 Antisense
AAGTCCTCAAACTCCAACGGAATAG 115 155 125 Antisense
ATTGCTTTACAATTCTGCTCTTATT 360 5 177 Antisense
CAAAAACCAATATTCTTCACTCTCC 546 191 225 Antisense
TCTTCACTCTCCCATAATTTGCAAC 221 617 238 Antisense
Sequence Source Affymetrix Proprietary Database