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[175263_at]

Description AU116750_rc /REP_DB=TREMBL Accession /GB=AU116750 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk748e6 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 14      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_total > 04      4grp_total > 14      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 155.2
(1.6)
P 		78.5
(-3)
P 		82.1
(-2.8)
P 		177.5
(3)
P 		99
B 137
(1.3)
P 		79.6
(-3)
P 		103.6
(-1.2)
P 		160.5
(3)
P 		81
C 158.2
(3)
P 		121.2
(0.1)
P 		80.4
(-3)
P 		143.5
(1.9)
P 		78
avr 150.1
(2.1) 		93.1
(-2.6) 		88.7
(-3) 		160.5
(3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 168.3
(3)
P 		137.3
(1.7)
P 		71
(-1.1)
P 		94.3
(-0.1)
P 		102.6
(0.2)
P 		25.4
(-3)
A 		143
B 148.1
(2.7)
P 		153
(3)
P 		120.1
(1.1)
P 		95.6
(-0.4)
P 		66.9
(-2.1)
P 		50.9
(-3)
P 		102
C 98.3
(0.2)
P 		128.2
(3)
P 		64.4
(-3)
P 		78.4
(-1.7)
P 		69.1
(-2.5)
P 		64.2
(-3)
P 		64
avr 138.2
(2.9) 		139.5
(3) 		85.2
(-0.5) 		89.4
(-0.2) 		79.5
(-0.9) 		46.8
(-3) 		93
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 56.5
(3)
P 		17
(-3)
P 		21.5
(-2.3)
P 		26
(-1.6)
P 		40
B 43.7
(3)
P 		19.7
(-3)
P 		24
(-1.9)
P 		34.2
(0.6)
P 		24
C 52.4
(3)
P 		34.8
(-0.7)
P 		28
(-2.2)
P 		24.2
(-3)
P 		28
avr 50.9
(3) 		23.8
(-3) 		24.5
(-2.8) 		28.1
(-2) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 31
(0.5)
P 		48.8
(3)
P 		15.5
(-1.7)
P 		23.9
(-0.5)
P 		30.9
(0.5)
P 		6.2
(-3)
A 		43
B 51.5
(3)
P 		50.9
(2.9)
P 		29.2
(-1.1)
P 		25.3
(-1.8)
P 		27.2
(-1.5)
P 		19
(-3)
P 		33
C 36.4
(2.3)
P 		39.1
(3)
P 		16.4
(-2.8)
P 		15.8
(-3)
P 		22.4
(-1.3)
P 		21.5
(-1.5)
P 		23
avr 39.6
(1.7) 		46.3
(3) 		20.4
(-2.1) 		21.7
(-1.8) 		26.8
(-0.8) 		15.6
(-3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175263_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21859
Sequence Type Exemplar sequence
Representative Public ID AU116750 NCBI
Target Description AU116750_rc /REP_DB=TREMBL Accession /GB=AU116750 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk748e6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028525(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028525 NCBI Caenorhabditis elegans C34B4.3 (C34B4.3) mRNA, complete cds. 11/11 None
C34B4.3 ENSEMBL cdna:known chromosome:CEL140:V:13069301:13073743:-1 gene:C34B4.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022856 5/11 Cross Hyb Matching Probes None
GENEFINDER00000022858 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13069310-13069585(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C34B4.3
Entrez Gene 179792 Entrez gene
SwissProt Q6BES4 EMBL-EBI
WormBase CE36583 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH04727 Hypothetical protein C34B4.3 [Caenorhabditis elegans] emb|CAH04707.1| Hypothetical protein C34B4.3 [Caenorhabditis elegans] ref|NP_001023696.1| C34B4.3 [Caenorhabditis elegans] 0.0
blast CAE64671 Hypothetical protein CBG09446 [Caenorhabditis briggsae] 1.0E-177
blast CAE75278 Hypothetical protein CBG23244 [Caenorhabditis briggsae] 1.0E-48
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023696.1 7 27-46,59-81,105-127,140-162,191-213,239-261,266-288
C34B4.3 7 27-46,59-81,105-127,140-162,191-213,239-261,266-288
Sequence
Target Sequence 
>C. ELEGANS:175263_AT
gttcttcaaaactcgttggtcctgaatctggatctcgacggtttttgagtctccctactt
ttcgatcaaaagaagatcttagatcctccggaacgccagtttaatttgaacctctagcat
gccacttttgaatttctgaatgcttttctatttcaaacagatccgaatctgttataatca
taatttatcgatttgatttctaatgctaattatttccagcggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCTTCAAAACTCGTTGGTCCTGA 484 395 35 Antisense
GTTGGTCCTGAATCTGGATCTCGAC 105 437 49 Antisense
GATCTCGACGGTTTTTGAGTCTCCC 438 419 65 Antisense
AGTCTCCCTACTTTTCGATCAAAAG 225 61 82 Antisense
GAAGATCTTAGATCCTCCGGAACGC 46 339 106 Antisense
TCCTCCGGAACGCCAGTTTAATTTG 497 263 118 Antisense
TAATTTGAACCTCTAGCATGCCACT 170 633 136 Antisense
TAGCATGCCACTTTTGAATTTCTGA 688 651 149 Antisense
GAATTTCTGAATGCTTTTCTATTTC 213 325 164 Antisense
GCTTTTCTATTTCAAACAGATCCGA 168 305 176 Antisense
TCTAATGCTAATTATTTCCAGCGGG 515 613 233 Antisense
Sequence Source Affymetrix Proprietary Database