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[175262_at]

Description AV200191_rc /REP_DB=TREMBL Accession /GB=AV200191 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk558b3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 22      4grp_highest_8_8 > 08      4grp_high_8_8 > 44      6grp_highest_nonorm > 15      6grp_total > 22      4grp_total > 51      6grp_highest_sub > 02      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5040
1 2 3 4 range
A 4450.8
(0.7)
P 		6141.1
(3)
P 		4653.6
(1)
P 		1735.4
(-3)
P 		4406
B 4402.3
(0.4)
P 		6273.5
(3)
P 		5647.8
(2.1)
P 		1990.8
(-3)
P 		4283
C 4651
(0.6)
P 		6691.4
(3)
P 		4905.2
(0.9)
P 		1651.3
(-3)
P 		5040
avr 4501.4
(0.6) 		6368.7
(3) 		5068.9
(1.3) 		1792.5
(-3) 		4576

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6346
1 2 3 4 5 6 range
A 5460.4
(1)
P 		7605.4
(3)
P 		7160.5
(2.6)
P 		4346.6
(-0.1)
P 		2987.7
(-1.4)
P 		1259.2
(-3)
P 		6346
B 6129.6
(1.5)
P 		7598.2
(3)
P 		7186.6
(2.6)
P 		3415.8
(-1.1)
P 		3628
(-0.9)
P 		1525.2
(-3)
P 		6073
C 5958.6
(1.5)
P 		7395
(3)
P 		6184.4
(1.7)
P 		4143.5
(-0.5)
P 		3336.9
(-1.4)
P 		1815.3
(-3)
P 		5580
avr 5849.5
(1.3) 		7532.9
(3) 		6843.8
(2.3) 		3968.6
(-0.6) 		3317.5
(-1.2) 		1533.2
(-3) 		6000
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1670
1 2 3 4 range
A 1620.5
(3)
P 		1333.1
(1.7)
P 		1216.5
(1.2)
P 		254
(-3)
P 		1367
B 1403.9
(2.2)
P 		1549.4
(3)
P 		1308.7
(1.7)
P 		424.2
(-3)
P 		1125
C 1539.6
(1.6)
P 		1923.8
(3)
P 		1709.6
(2.2)
P 		278.4
(-3)
P 		1645
avr 1521.3
(2.6) 		1602.1
(3) 		1411.6
(2.1) 		318.9
(-3) 		1283

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2398
1 2 3 4 5 6 range
A 1006.6
(-1.2)
P 		2704.9
(3)
P 		1559.4
(0.1)
P 		1102.4
(-1)
P 		901.6
(-1.5)
P 		306.6
(-3)
P 		2398
B 2132.8
(1.8)
P 		2529.1
(3)
P 		1745.1
(0.6)
P 		904.7
(-2)
P 		1474
(-0.2)
P 		568.7
(-3)
P 		1960
C 2208.6
(2.8)
P 		2256.5
(3)
P 		1574
(0.5)
P 		833.3
(-2.2)
P 		1079.8
(-1.3)
P 		607.7
(-3)
P 		1649
avr 1782.7
(0.9) 		2496.8
(3) 		1626.2
(0.4) 		946.8
(-1.6) 		1151.8
(-1) 		494.3
(-3) 		2003
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175262_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21936
Sequence Type Exemplar sequence
Representative Public ID AV200191 NCBI
Target Description AV200191_rc /REP_DB=TREMBL Accession /GB=AV200191 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk558b3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182350(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182350 NCBI Caenorhabditis elegans F23H12.9 (F23H12.9) mRNA, complete cds. 11/11 None
SNAP00000020016 ENSEMBL cdna:SNAP chromosome:CEL140:V:12368043:12368311:1 9/11 None
F23H12.9 ENSEMBL cdna:known chromosome:CEL140:V:12368012:12368454:1 gene:F23H12.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182351 2/11 Cross Hyb Matching Probes None
SNAP00000020014 2/11 Cross Hyb Matching Probes None
GENEFINDER00000020023 2/11 Cross Hyb Matching Probes None
F23H12.8 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12368106-12368384(+) 98.93 98.93
Public Domain and Genome References
Gene Title
Ensembl F23H12.9
Entrez Gene 179696 Entrez gene
SwissProt Q8I4K5 EMBL-EBI
WormBase CE31914 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD54136 Hypothetical protein F23H12.9 [Caenorhabditis elegans] ref|NP_872150.1| F23H12.9 [Caenorhabditis elegans] 9.0E-10
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_872150.1 1 5-27
F23H12.9 1 5-27
SNAP00000020016 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:175262_AT
tcctcgtcatctgtgcattcatcactgagactgatgctcaatactacggatacggatatg
gatacccatcttcctattatggatacggatacggaaactactacggatcctacccatact
atggaggatatggatactacggaaagagagaagctggatttggtccaagtcagcagaaca
atcaataatttaacaattgatacacactcgcttaaactgtacattcatctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTCGTCATCTGTGCATTCATCAC 392 593 33 Antisense
CGTCATCTGTGCATTCATCACTGAG 81 247 37 Antisense
GACTGATGCTCAATACTACGGATAC 313 375 61 Antisense
ACGGATATGGATACCCATCTTCCTA 477 95 84 Antisense
GGATACCCATCTTCCTATTATGGAT 83 511 92 Antisense
GATACGGAAACTACTACGGATCCTA 632 421 120 Antisense
TACGGATCCTACCCATACTATGGAG 383 647 134 Antisense
GAAGCTGGATTTGGTCCAAGTCAGC 564 341 182 Antisense
GGTCCAAGTCAGCAGAACAATCAAT 611 495 194 Antisense
CAATTGATACACACTCGCTTAAACT 13 179 226 Antisense
CTCGCTTAAACTGTACATTCATCTG 616 233 239 Antisense
Sequence Source Affymetrix Proprietary Database