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[175261_s_at]

Description AV182838_rc /REP_DB=TREMBL Accession /GB=AV182838 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk643c3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 09      4grp_highest_8_8 > 60      4grp_high_8_8 > 25      6grp_highest_nonorm > 74      6grp_total > 91      4grp_total > 38      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 466
1 2 3 4 range
A 761.2
(3)
P 		388.1
(-2.2)
P 		327.3
(-3)
P 		451.8
(-1.3)
P 		434
B 698.3
(3)
P 		501.4
(-0.1)
P 		315.6
(-3)
P 		554.6
(0.7)
P 		383
C 781.8
(3)
P 		502.2
(-1.3)
P 		394.9
(-3)
P 		505.7
(-1.3)
P 		387
avr 747.1
(3) 		463.9
(-1.2) 		345.9
(-3) 		504
(-0.6) 		401

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 490
1 2 3 4 5 6 range
A 949.7
(2.5)
P 		670.2
(-0.9)
P 		567.1
(-2.2)
P 		866.4
(1.5)
P 		988.3
(3)
P 		498.2
(-3)
P 		490
B 896.5
(1.8)
P 		584.3
(-2.8)
P 		568.5
(-3)
P 		977.2
(3)
P 		889.1
(1.7)
P 		572.1
(-2.9)
P 		409
C 856.1
(2.5)
P 		541.4
(-3)
P 		583.7
(-2.3)
P 		846.6
(2.4)
P 		882
(3)
P 		660.5
(-0.9)
P 		341
avr 900.8
(2.7) 		598.6
(-2.6) 		573.1
(-3) 		896.7
(2.6) 		919.8
(3) 		576.9
(-2.9) 		347
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 211
1 2 3 4 range
A 277.1
(3)
P 		84.2
(-2.5)
P 		85.6
(-2.4)
P 		66.1
(-3)
P 		211
B 222.7
(3)
P 		123.8
(-1)
P 		73.1
(-3)
P 		118.2
(-1.2)
P 		150
C 258.8
(3)
P 		144.4
(-1)
P 		137.7
(-1.2)
P 		85.3
(-3)
P 		174
avr 252.9
(3) 		117.5
(-2) 		98.8
(-2.7) 		89.9
(-3) 		163

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 240
1 2 3 4 5 6 range
A 175.1
(-1.2)
P 		238.4
(1)
P 		123.5
(-2.9)
P 		219.7
(0.3)
P 		298.2
(3)
P 		121.3
(-3)
P 		177
B 311.9
(1.7)
P 		194.5
(-1.5)
P 		138
(-3)
P 		258.8
(0.2)
P 		361.2
(3)
P 		213.3
(-1)
P 		223
C 317.3
(3)
P 		165.2
(-2.4)
P 		148.6
(-3)
P 		170.3
(-2.2)
P 		285.4
(1.9)
P 		221.1
(-0.4)
P 		169
avr 268.1
(1.4) 		199.4
(-0.9) 		136.7
(-3) 		216.3
(-0.3) 		314.9
(3) 		185.2
(-1.4) 		178
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175261_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21687
Sequence Type Exemplar sequence
Representative Public ID AV182838 NCBI
Target Description AV182838_rc /REP_DB=TREMBL Accession /GB=AV182838 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk643c3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072100(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072100 NCBI Caenorhabditis elegans F25B4.2 (F25B4.2) mRNA, complete cds. 11/11 None
F25B4.2 ENSEMBL cdna:known chromosome:CEL140:V:5712013:5714922:1 gene:F25B4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5714572-5714851(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F25B4.2
Entrez Gene 178959 Entrez gene
SwissProt Q22967 EMBL-EBI
WormBase CE30760 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.23383.1.S1_AT similar to pellino 2 cfa
DROSOPHILA_2:1626980_AT Pellino dm
DROSGENOME1:154889_AT Pellino dm
HG-U133_PLUS_2:219132_AT pellino homolog 2 (Drosophila) hs
HG-U133A:219132_AT pellino homolog 2 (Drosophila) hs
HG-FOCUS:219132_AT pellino homolog 2 (Drosophila) hs
HG-U133A_2:219132_AT pellino homolog 2 (Drosophila) hs
HU35KSUBC:RC_N63226_AT pellino homolog 2 (Drosophila) hs
U133_X3P:G10864062_3P_AT pellino homolog 2 (Drosophila) hs
HG-U95C:62136_AT pellino homolog 2 (Drosophila) hs
U133_X3P:HS2.384645.1.S1_3P_AT Pellino homolog 2 (Drosophila) hs
HG-U133_PLUS_2:1561129_AT Pellino homolog 2 (Drosophila) hs
HG-U95B:42401_AT Pellino homolog 2 (Drosophila) hs
HU35KSUBD:RC_AA482008_AT Pellino homolog 2 (Drosophila) hs
MOE430A:1419006_S_AT pellino 2 mm
MOUSE430A_2:1419006_S_AT pellino 2 mm
MOUSE430_2:1419006_S_AT pellino 2 mm
MG-U74BV2:105315_AT pellino 2 mm
MG-U74CV2:167333_AT pellino 2 mm
MOE430B:1436966_AT pellino 2 mm
MOUSE430_2:1436966_AT pellino 2 mm
MG-U74CV2:135707_AT Pellino 2, mRNA (cDNA clone MGC:38603 IMAGE:5355240) mm
MOE430B:1437181_AT Pellino 2, mRNA (cDNA clone MGC:38603 IMAGE:5355240) mm
MOUSE430_2:1437181_AT Pellino 2, mRNA (cDNA clone MGC:38603 IMAGE:5355240) mm
MU19KSUBA:TC22403_AT Pellino 2, mRNA (cDNA clone MGC:38603 IMAGE:5355240) mm
RAE230B:1384706_AT similar to Pellino protein homolog 2 (Pellino 2) rn
RAT230_2:1384706_AT similar to Pellino protein homolog 2 (Pellino 2) rn
Protein Similarities
Method ID Description E-Value
blast AAB37081 Hypothetical protein F25B4.2 [Caenorhabditis elegans] ref|NP_504501.2| F25B4.2 [Caenorhabditis elegans] 0.0
blast CAB97346 Pellino protein [Caenorhabditis elegans] 0.0
blast CAE64584 Hypothetical protein CBG09337 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006800 EMBL-EBI Pellino 1.3E-15
Pfam IPR006800 EMBL-EBI Pellino 7.0E-126
Sequence
Target Sequence 
>C. ELEGANS:175261_S_AT
catcatcttttttctgaatcataatcacttctgtttctcatcataaccacgcacacaccc
ccaccacctttcaaaaccggtctctatctctgctgaaagccgaaaatctggaaatttttc
tctgaaatttgtgttcatcaacttgcaactaatcaacctgtcatcgaatatcacctttcg
ccaacattttcaatcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCATCTTTTTTCTGAATCATAAT 138 213 13 Antisense
GAATCATAATCACTTCTGTTTCTCA 599 327 28 Antisense
TAATCACTTCTGTTTCTCATCATAA 561 635 34 Antisense
TGTTTCTCATCATAACCACGCACAC 477 561 44 Antisense
CACCTTTCAAAACCGGTCTCTATCT 417 197 77 Antisense
CGGTCTCTATCTCTGCTGAAAGCCG 643 243 90 Antisense
CTATCTCTGCTGAAAGCCGAAAATC 702 223 96 Antisense
GAAATTTGTGTTCATCAACTTGCAA 136 363 136 Antisense
CATCAACTTGCAACTAATCAACCTG 274 211 148 Antisense
CGAATATCACCTTTCGCCAACATTT 595 253 177 Antisense
ACCTTTCGCCAACATTTTCAATCAT 500 87 185 Antisense
Sequence Source Affymetrix Proprietary Database