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[175260_s_at]

Description AV200537_rc /REP_DB=TREMBL Accession /GB=AV200537 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk576f8 : 3prime end, single read.
Cluster 6grp_total > 85      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 56.7
(-0.5)
A 		29.9
(-1.9)
A 		10.3
(-3)
A 		119.6
(3)
P 		109
B 31.2
(-2.1)
A 		18.7
(-3)
A 		47.3
(-0.9)
A 		102.3
(3)
P 		84
C 64.6
(-1.4)
P 		47.3
(-3)
A 		70.6
(-0.8)
A 		110.3
(3)
A 		63
avr 50.8
(-1.6) 		32
(-3) 		42.7
(-2.2) 		110.7
(3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 21.4
(-3)
A 		31.5
(-1.4)
A 		40.9
(0)
A 		43.2
(0.4)
A 		53.9
(2)
A 		60.4
(3)
A 		39
B 66.9
(3)
A 		49.2
(-2.2)
A 		46.4
(-3)
A 		58.8
(0.6)
A 		53.5
(-0.9)
A 		60.6
(1.2)
P 		21
C 50.4
(-1.4)
A 		37.5
(-3)
M 		59.8
(-0.2)
A 		84.9
(2.9)
A 		67.1
(0.7)
M 		85.6
(3)
A 		48
avr 46.2
(-1.6) 		39.4
(-3) 		49
(-1) 		62.3
(1.7) 		58.2
(0.8) 		68.9
(3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 20.6
(3)
A 		6.5
(-1.7)
A 		2.7
(-3)
A 		17.5
(2)
P 		18
B 10
(-1.1)
A 		4.6
(-3)
A 		11
(-0.8)
A 		21.8
(3)
P 		17
C 21.4
(1.3)
P 		13.6
(-3)
A 		24.6
(3)
A 		18.6
(-0.3)
A 		11
avr 17.3
(1.9) 		8.2
(-3) 		12.8
(-0.5) 		19.3
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 3.9
(-3)
A 		11.2
(0.5)
A 		8.9
(-0.6)
A 		11
(0.4)
A 		16.3
(3)
A 		14.7
(2.2)
A 		12
B 23.3
(3)
A 		16.4
(-0.5)
A 		11.3
(-3)
A 		15.6
(-0.9)
A 		21.8
(2.3)
A 		22.6
(2.7)
P 		12
C 18.7
(-0.5)
A 		11.4
(-3)
M 		15.2
(-1.7)
A 		17.1
(-1)
A 		21.7
(0.6)
M 		28.7
(3)
A 		17
avr 15.3
(-0.9) 		13
(-2.3) 		11.8
(-3) 		14.6
(-1.4) 		19.9
(1.8) 		22
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175260_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21285
Sequence Type Exemplar sequence
Representative Public ID AV200537 NCBI
Target Description AV200537_rc /REP_DB=TREMBL Accession /GB=AV200537 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk576f8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028041(11), NM_001028042(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028041 NCBI Caenorhabditis elegans F49E8.7a (F49E8.7) mRNA, complete cds. 11/11 None
NM_001028042 NCBI Caenorhabditis elegans F49E8.7b (F49E8.7) mRNA, complete cds. 10/11 None
SNAP00000021363 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7554630:7557175:-1 9/11 None
GENEFINDER00000021365 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7554630:7556347:-1 11/11 None
F49E8.7a.1 ENSEMBL cdna:known chromosome:CEL140:IV:7554473:7556411:-1 gene:F49E8.7 11/11 None
F49E8.7a.2 ENSEMBL cdna:known chromosome:CEL140:IV:7554485:7556349:-1 gene:F49E8.7 11/11 None
F49E8.7b ENSEMBL cdna:known chromosome:CEL140:IV:7554630:7556402:-1 gene:F49E8.7 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7555981-7556347(-) 100.0 100.0
Public Domain and Genome References
Ensembl F49E8.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB03155 Hypothetical protein F49E8.7a [Caenorhabditis elegans] ref|NP_001023212.1| F49E8.7a [Caenorhabditis elegans] 0.0
blast AAU05569 Hypothetical protein F49E8.7b [Caenorhabditis elegans] ref|NP_001023213.1| F49E8.7b [Caenorhabditis elegans] 0.0
blast CAE61914 Hypothetical protein CBG05910 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:175260_S_AT
aaatcgaagaactcagtcaccacacaaactcaatgggtaagtgatctctactattaaaat
ggagtggccgtcaaaacttcagaaaagactcaagattgactttgtcgaaaggaaaataga
caaggatgatgtattttttgaagaagtcagcgacgagcaattaaatgacaaaataattgt
tcctcttttcacaagcagtggaacctttgaagagactatcgggatcttaattcaatggca
agaatatttgaaatctcgttccgacagactcagcgaagttttcctat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCGAAGAACTCAGTCACCACAC 376 119 16 Antisense
ACTCAGTCACCACACAAACTCAATG 369 99 26 Antisense
AAGACTCAAGATTGACTTTGTCGAA 663 149 100 Antisense
GAAGTCAGCGACGAGCAATTAAATG 710 333 158 Antisense
GACAAAATAATTGTTCCTCTTTTCA 55 365 182 Antisense
TGTTCCTCTTTTCACAAGCAGTGGA 492 559 193 Antisense
TTTTCACAAGCAGTGGAACCTTTGA 221 673 201 Antisense
GAACCTTTGAAGAGACTATCGGGAT 613 323 216 Antisense
CTATCGGGATCTTAATTCAATGGCA 149 223 231 Antisense
TGAAATCTCGTTCCGACAGACTCAG 480 571 264 Antisense
GACAGACTCAGCGAAGTTTTCCTAT 190 369 278 Antisense
Sequence Source Affymetrix Proprietary Database