[Home] | [Total List]

[175258_at]

Description AV184446_rc /REP_DB=TREMBL Accession /GB=AV184446 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk664f5 : 3prime end, single read.
Cluster 6grp_total > 27      4grp_total > 30      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 30.2
(3)
A 		25.8
(2.1)
A 		1.9
(-3)
A 		16.1
(0)
A 		28
B 28.9
(1.5)
P 		35.1
(3)
A 		10.7
(-3)
A 		23.1
(0)
A 		24
C 54.8
(3)
P 		4.2
(-3)
A 		10.8
(-2.2)
A 		42.8
(1.6)
A 		51
avr 38
(3) 		21.7
(-0.2) 		7.8
(-3) 		27.3
(0.9) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 103
(3)
P 		32.7
(-1.5)
A 		31.3
(-1.6)
A 		37.2
(-1.2)
A 		9.1
(-3)
A 		37.5
(-1.2)
P 		94
B 44.4
(3)
P 		43.6
(2.8)
P 		20
(-2.6)
A 		18.2
(-3)
A 		34.6
(0.8)
P 		24.6
(-1.5)
A 		26
C 33.3
(0.5)
P 		47.1
(3)
P 		13.4
(-3)
A 		18.5
(-2.1)
A 		17.8
(-2.2)
A 		28.1
(-0.4)
A 		34
avr 60.2
(3) 		41.1
(0.1) 		21.6
(-2.8) 		24.6
(-2.4) 		20.5
(-3) 		30.1
(-1.5) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 11
(3)
A 		5.6
(-0.1)
A 		0.5
(-3)
A 		2.4
(-1.9)
A 		11
B 9.2
(3)
P 		8.7
(2.6)
A 		2.5
(-3)
A 		4.9
(-0.9)
A 		7
C 18.1
(3)
P 		1.2
(-3)
A 		3.8
(-2.1)
A 		7.2
(-0.9)
A 		17
avr 12.8
(3) 		5.2
(-1.3) 		2.3
(-3) 		4.8
(-1.6) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 19
(3)
P 		11.6
(0.3)
A 		6.8
(-1.5)
A 		9.4
(-0.6)
A 		2.8
(-3)
A 		9.1
(-0.7)
P 		16
B 15.4
(3)
P 		14.5
(2.5)
P 		4.9
(-2.9)
A 		4.8
(-3)
A 		14.1
(2.3)
P 		9.2
(-0.5)
A 		11
C 12.3
(1.9)
P 		14.4
(3)
P 		3.4
(-3)
A 		3.7
(-2.8)
A 		5.7
(-1.7)
A 		9.4
(0.3)
A 		11
avr 15.6
(3) 		13.5
(1.8) 		5
(-3) 		6
(-2.4) 		7.5
(-1.6) 		9.2
(-0.6) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175258_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22011
Sequence Type Exemplar sequence
Representative Public ID AV184446 NCBI
Target Description AV184446_rc /REP_DB=TREMBL Accession /GB=AV184446 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk664f5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) AF332212(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AF332212 NCBI Caenorhabditis elegans clone yk664f5 nuclear receptor NHR-98 gene, partial cds. 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000034176 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:456546-456826(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK17983 nuclear receptor NHR-98 [Caenorhabditis elegans] 1.0E-132
blast NP_503208 Nuclear Hormone Receptor family member (nhr-98) [Caenorhabditis elegans] gb|AAK84556.2| Nuclear hormone receptor family protein 98 [Caenorhabditis elegans] sp|Q966I0|NHR98_CAEEL Nuclear hormone receptor family member nhr-98 1.0E-132
blast AAR11989 nuclear receptor NHR-123 [Caenorhabditis elegans] ref|NP_503207.2| Nuclear Hormone Receptor family member (nhr-123) [Caenorhabditis elegans] gb|AAK84557.2| Nuclear hormone receptor family protein 123 [Caenorhabditis elegans] 1.0E-103
Sequence
Target Sequence 
>C. ELEGANS:175258_AT
atttttcagatgttattgttatactaatattttaataaaatcgttatccgcacagtactt
ataaatatttgttttcctcttatcatttttgatgtgtacctttttggttcttctcaaatt
ttttttataataagtagtaaattactgttccaatactacaccaaatcttcccttgttttc
aaattgttcagttaataaggaaattcaaaaagtaaatcgtttttctacataatctcactt
ttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTTTCAGATGTTATTGTTATACT 536 15 17 Antisense
AAATCGTTATCCGCACAGTACTTAT 85 119 54 Antisense
ATCCGCACAGTACTTATAAATATTT 298 39 62 Antisense
ATATTTGTTTTCCTCTTATCATTTT 589 19 81 Antisense
TGTTTTCCTCTTATCATTTTTGATG 491 561 86 Antisense
GATGTGTACCTTTTTGGTTCTTCTC 224 409 107 Antisense
TGTACCTTTTTGGTTCTTCTCAAAT 164 559 111 Antisense
GTAAATTACTGTTCCAATACTACAC 674 459 153 Antisense
TACTGTTCCAATACTACACCAAATC 86 647 159 Antisense
TCTTCCCTTGTTTTCAAATTGTTCA 407 617 182 Antisense
GTTTTTCTACATAATCTCACTTTTT 496 449 235 Antisense
Sequence Source Affymetrix Proprietary Database