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[175257_s_at]

Description AU115660_rc /REP_DB=TREMBL Accession /GB=AU115660 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk735c4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 32      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 71      6grp_total > 22      4grp_total > 56      6grp_highest_sub > 02      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 443
1 2 3 4 range
A 517.1
(1.1)
P 		463.9
(0)
P 		616.2
(3)
P 		310.1
(-3)
P 		306
B 438.5
(-1.4)
P 		529.9
(-0.1)
P 		752.6
(3)
P 		320.7
(-3)
P 		432
C 555.8
(0.1)
P 		535.1
(-0.2)
P 		721.6
(3)
P 		376.2
(-3)
P 		345
avr 503.8
(-0.2) 		509.6
(-0.1) 		696.8
(3) 		335.7
(-3) 		361

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 290
1 2 3 4 5 6 range
A 346.3
(-0.4)
P 		473.7
(3)
P 		458.9
(2.6)
P 		357.8
(-0.1)
P 		271.5
(-2.4)
P 		250.2
(-3)
P 		224
B 374.7
(0.3)
P 		488.9
(3)
P 		417.3
(1.3)
P 		284.6
(-1.9)
P 		236.8
(-3)
P 		245.5
(-2.8)
P 		252
C 448.7
(2.7)
P 		460.8
(3)
P 		398.5
(1.6)
P 		371.7
(1)
P 		199.4
(-3)
P 		297.2
(-0.8)
P 		261
avr 389.9
(0.9) 		474.5
(3) 		424.9
(1.8) 		338
(-0.4) 		235.9
(-3) 		264.3
(-2.3) 		239
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 188.3
(3)
P 		100.7
(-0.7)
P 		161.1
(1.9)
P 		45.4
(-3)
P 		143
B 139.8
(1)
P 		130.9
(0.5)
P 		174.4
(3)
P 		68.3
(-3)
P 		106
C 184
(0.8)
P 		153.9
(-0.1)
P 		251.5
(3)
P 		63.4
(-3)
P 		188
avr 170.7
(1.9) 		128.5
(0.1) 		195.7
(3) 		59
(-3) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 63.8
(-2.8)
P 		168.5
(3)
P 		99.9
(-0.8)
P 		90.7
(-1.3)
P 		81.9
(-1.8)
P 		60.9
(-3)
P 		108
B 130.4
(0.8)
P 		162.7
(3)
P 		101.3
(-1.2)
P 		75.4
(-3)
P 		96.2
(-1.6)
P 		91.5
(-1.9)
P 		87
C 166.3
(3)
P 		140.6
(1.5)
P 		101.4
(-0.8)
P 		74.7
(-2.4)
P 		64.5
(-3)
P 		99.5
(-0.9)
P 		102
avr 120.2
(0.1) 		157.3
(3) 		100.9
(-1.4) 		80.3
(-3) 		80.9
(-3) 		84
(-2.7) 		77
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175257_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21798
Sequence Type Exemplar sequence
Representative Public ID AU115660 NCBI
Target Description AU115660_rc /REP_DB=TREMBL Accession /GB=AU115660 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk735c4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072049(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072049 NCBI Caenorhabditis elegans T05C3.6 (T05C3.6) mRNA, complete cds. 11/11 None
SNAP00000006789 ENSEMBL cdna:SNAP chromosome:CEL140:V:5490345:5502822:1 11/11 None
GENEFINDER00000006791 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5490274:5502822:1 11/11 None
T05C3.6 ENSEMBL cdna:known chromosome:CEL140:V:5490182:5493441:1 gene:T05C3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5492555-5493385(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05C3.6
Entrez Gene 178931 Entrez gene
SwissProt Q95X95 EMBL-EBI
WormBase CE27438 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.28140.1.S1_S_AT similar to phospholipase D family, member 4 cfa
DROSOPHILA_2:1628602_A_AT dm
DROSGENOME1:153117_AT dm
CHICKEN:GGAAFFX.7416.1.S1_AT similar to expressed sequence AI132321 gga
CHICKEN:GGAAFFX.7420.1.S1_AT similar to expressed sequence AI132321 gga
HG-U133_PLUS_2:235802_AT phospholipase D family, member 4 hs
HG-U133B:235802_AT phospholipase D family, member 4 hs
U133_X3P:HS.136896.0.A1_3P_AT phospholipase D family, member 4 hs
HG-U95D:79066_AT phospholipase D family, member 4 hs
U133_X3P:HS2.407101.1.S1_3P_AT Phospholipase D family, member 4 hs
HG-U133_PLUS_2:1566433_AT Phospholipase D family, member 4 hs
HG-U133_PLUS_2:1566432_AT Phospholipase D family, member 4 hs
MG-U74AV2:103299_AT phospholipase D family, member 4 mm
MU11KSUBA:AA189702_AT phospholipase D family, member 4 mm
MG-U74AV2:162043_I_AT phospholipase D family, member 4 mm
MG-U74CV2:168401_F_AT phospholipase D family, member 4 mm
MOE430A:1433678_AT phospholipase D family, member 4 mm
MOUSE430A_2:1433678_AT phospholipase D family, member 4 mm
MOUSE430_2:1433678_AT phospholipase D family, member 4 mm
MU19KSUBC:TC40374_AT Phospholipase D family, member 4, mRNA (cDNA clone MGC:68329 IMAGE:6442038) mm
RAE230A:1373785_AT similar to expressed sequence AI132321 rn
RAT230_2:1373785_AT similar to expressed sequence AI132321 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504450 T05C3.6 [Caenorhabditis elegans] gb|AAK71397.1| Hypothetical protein T05C3.6 [Caenorhabditis elegans] 0.0
blast T31733 hypothetical protein T05C3.2 - Caenorhabditis elegans 0.0
blast CAE64625 Hypothetical protein CBG09383 [Caenorhabditis briggsae] 0.0
blast NP_504451 T05C3.2 [Caenorhabditis elegans] gb|AAK71396.1| Hypothetical protein T05C3.2 [Caenorhabditis elegans] 0.0
blast CAE64624 Hypothetical protein CBG09382 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001736 EMBL-EBI Phospholipase D/Transphosphatidylase 1.8E-8
Pfam IPR001736 EMBL-EBI Phospholipase D/Transphosphatidylase 1.8E-8
Pfam IPR007111 EMBL-EBI NACHT nucleoside triphosphatase 1.3E-47
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.41
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.9E-6
Pfam IPR001736 EMBL-EBI Phospholipase D/Transphosphatidylase 1.8E-8
Pfam IPR007111 EMBL-EBI NACHT nucleoside triphosphatase 1.3E-47
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.41
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 7.2E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000006791 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:175257_S_AT
gatttgtgcaggttcctgaaatgcaatatggaaagattccatacgcaagagtttatcata
ataagtattttgtaacggaaagtgccgcatatattggaacatcaaattggtcatcagact
attggcagtatacagccggtatcggaatagtgatccgtgcggatgatttcacttccaaat
ccaaactcgttcaacaattcacttccgtgttcgaaagagattggtcctcaacttacacaa
ttcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTGTGCAGGTTCCTGAAATGCA 698 425 17 Antisense
GTAACGGAAAGTGCCGCATATATTG 25 463 88 Antisense
GAACATCAAATTGGTCATCAGACTA 196 351 113 Antisense
GGTCATCAGACTATTGGCAGTATAC 271 503 125 Antisense
GGCAGTATACAGCCGGTATCGGAAT 209 535 140 Antisense
GATCCGTGCGGATGATTTCACTTCC 282 417 168 Antisense
CACTTCCAAATCCAAACTCGTTCAA 629 195 186 Antisense
AAACTCGTTCAACAATTCACTTCCG 64 1 199 Antisense
AATTCACTTCCGTGTTCGAAAGAGA 17 177 212 Antisense
AAGAGATTGGTCCTCAACTTACACA 70 155 231 Antisense
TTGGTCCTCAACTTACACAATTCCT 626 705 237 Antisense
Sequence Source Affymetrix Proprietary Database